Hb_177994_010

Information

Type -
Description -
Location Contig177994: 3875-6320
Sequence    

Annotation

kegg
ID rcu:RCOM_1680770
description hypothetical protein
nr
ID XP_012066561.1
description PREDICTED: cullin-1 [Jatropha curcas]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A067LEP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24333 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin 1 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17098: 1873-5838
cDNA
(Sanger)
(ID:Location)		 041_I13.ab1: 1873-5838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177994_010 0.0 - - PREDICTED: cullin-1 [Jatropha curcas]
2 Hb_000116_560 0.103244534 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
3 Hb_004449_180 0.1226645855 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
4 Hb_000926_260 0.1231184303 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006916_110 0.132924662 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
6 Hb_000088_270 0.1330280551 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
7 Hb_000684_040 0.1339158074 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
8 Hb_000165_080 0.1365201947 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_170098_010 0.1390643028 - - PREDICTED: cullin-1 [Jatropha curcas]
10 Hb_000365_010 0.1392066962 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
11 Hb_001799_060 0.1393313502 - - Rab6 [Hevea brasiliensis]
12 Hb_001019_050 0.1414513649 - - PREDICTED: importin-13 [Jatropha curcas]
13 Hb_000173_130 0.1417185234 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
14 Hb_000342_050 0.1430492224 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
15 Hb_004880_150 0.1445877654 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
16 Hb_143629_100 0.1451392387 - - PREDICTED: phytochrome A [Jatropha curcas]
17 Hb_042474_010 0.145162687 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
18 Hb_023344_150 0.1471560639 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
19 Hb_006683_020 0.1471968994 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
20 Hb_002915_060 0.1479970283 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_177994_010 Hb_177994_010 Hb_000116_560 Hb_000116_560 Hb_177994_010--Hb_000116_560 Hb_004449_180 Hb_004449_180 Hb_177994_010--Hb_004449_180 Hb_000926_260 Hb_000926_260 Hb_177994_010--Hb_000926_260 Hb_006916_110 Hb_006916_110 Hb_177994_010--Hb_006916_110 Hb_000088_270 Hb_000088_270 Hb_177994_010--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_177994_010--Hb_000684_040 Hb_018845_010 Hb_018845_010 Hb_000116_560--Hb_018845_010 Hb_011671_120 Hb_011671_120 Hb_000116_560--Hb_011671_120 Hb_000375_300 Hb_000375_300 Hb_000116_560--Hb_000375_300 Hb_081599_010 Hb_081599_010 Hb_000116_560--Hb_081599_010 Hb_000913_040 Hb_000913_040 Hb_000116_560--Hb_000913_040 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_004449_180--Hb_002272_270 Hb_011344_200 Hb_011344_200 Hb_004449_180--Hb_011344_200 Hb_000555_100 Hb_000555_100 Hb_004449_180--Hb_000555_100 Hb_000889_010 Hb_000889_010 Hb_004449_180--Hb_000889_010 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_026198_010 Hb_026198_010 Hb_000926_260--Hb_026198_010 Hb_001328_080 Hb_001328_080 Hb_000926_260--Hb_001328_080 Hb_060094_010 Hb_060094_010 Hb_000926_260--Hb_060094_010 Hb_006468_010 Hb_006468_010 Hb_000926_260--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_000926_260--Hb_003636_080 Hb_089140_040 Hb_089140_040 Hb_000926_260--Hb_089140_040 Hb_012325_010 Hb_012325_010 Hb_006916_110--Hb_012325_010 Hb_042474_010 Hb_042474_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000209_100 Hb_000209_100 Hb_006916_110--Hb_000209_100 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_001019_050 Hb_001019_050 Hb_000088_270--Hb_001019_050 Hb_011224_160 Hb_011224_160 Hb_000088_270--Hb_011224_160 Hb_000347_450 Hb_000347_450 Hb_000088_270--Hb_000347_450 Hb_000008_420 Hb_000008_420 Hb_000088_270--Hb_000008_420 Hb_025336_020 Hb_025336_020 Hb_000088_270--Hb_025336_020 Hb_003777_290 Hb_003777_290 Hb_000088_270--Hb_003777_290 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_000684_040--Hb_000347_450 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000723_230 Hb_000723_230 Hb_000684_040--Hb_000723_230 Hb_010775_040 Hb_010775_040 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43601 8.40611 7.49234 13.1679 2.28065 3.36399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52538 10.4384 2.34899 11.985 6.91063

CAGE analysis