Hb_000889_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig889: 9840-11007
Sequence    

Annotation

kegg
ID pmum:103329399
description transcription factor CPC-like
nr
ID XP_007216010.1
description hypothetical protein PRUPE_ppa014728mg [Prunus persica]
swissprot
ID O22059
description Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1
trembl
ID M5WU46
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014728mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61543: 9961-10264 , PASA_asmbl_61544: 10312-11016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000889_010 0.0 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
2 Hb_009898_040 0.1163163288 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004449_180 0.1171969475 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
4 Hb_000684_520 0.1177878934 - - glutathione S-transferase L3-like [Jatropha curcas]
5 Hb_001799_060 0.1246651501 - - Rab6 [Hevea brasiliensis]
6 Hb_168893_020 0.1248554313 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
7 Hb_001148_090 0.1251652722 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
8 Hb_000165_080 0.1310764596 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_000210_060 0.1340850374 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
10 Hb_000555_100 0.1348882672 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
11 Hb_001369_250 0.1357896094 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
12 Hb_001946_310 0.13785199 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
13 Hb_001825_040 0.1386830866 - - myosin XI, putative [Ricinus communis]
14 Hb_015057_020 0.1392763122 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
15 Hb_000367_090 0.1394978381 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
16 Hb_000046_170 0.1395057523 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
17 Hb_000975_350 0.1400812806 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_002486_080 0.1428596612 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
19 Hb_000648_050 0.1435441682 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
20 Hb_005648_010 0.1438270567 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000889_010 Hb_000889_010 Hb_009898_040 Hb_009898_040 Hb_000889_010--Hb_009898_040 Hb_004449_180 Hb_004449_180 Hb_000889_010--Hb_004449_180 Hb_000684_520 Hb_000684_520 Hb_000889_010--Hb_000684_520 Hb_001799_060 Hb_001799_060 Hb_000889_010--Hb_001799_060 Hb_168893_020 Hb_168893_020 Hb_000889_010--Hb_168893_020 Hb_001148_090 Hb_001148_090 Hb_000889_010--Hb_001148_090 Hb_001946_310 Hb_001946_310 Hb_009898_040--Hb_001946_310 Hb_000402_130 Hb_000402_130 Hb_009898_040--Hb_000402_130 Hb_066842_010 Hb_066842_010 Hb_009898_040--Hb_066842_010 Hb_000025_190 Hb_000025_190 Hb_009898_040--Hb_000025_190 Hb_000975_350 Hb_000975_350 Hb_009898_040--Hb_000975_350 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_004449_180--Hb_002272_270 Hb_011344_200 Hb_011344_200 Hb_004449_180--Hb_011344_200 Hb_000555_100 Hb_000555_100 Hb_004449_180--Hb_000555_100 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_001510_020 Hb_001510_020 Hb_000684_520--Hb_001510_020 Hb_000684_520--Hb_168893_020 Hb_010560_050 Hb_010560_050 Hb_000684_520--Hb_010560_050 Hb_004429_090 Hb_004429_090 Hb_000684_520--Hb_004429_090 Hb_000187_040 Hb_000187_040 Hb_000684_520--Hb_000187_040 Hb_000210_060 Hb_000210_060 Hb_000684_520--Hb_000210_060 Hb_000197_190 Hb_000197_190 Hb_001799_060--Hb_000197_190 Hb_001799_060--Hb_001946_310 Hb_005648_010 Hb_005648_010 Hb_001799_060--Hb_005648_010 Hb_000800_090 Hb_000800_090 Hb_001799_060--Hb_000800_090 Hb_004880_150 Hb_004880_150 Hb_001799_060--Hb_004880_150 Hb_000165_080 Hb_000165_080 Hb_001799_060--Hb_000165_080 Hb_006538_090 Hb_006538_090 Hb_168893_020--Hb_006538_090 Hb_168893_020--Hb_000210_060 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_002781_050 Hb_002781_050 Hb_001148_090--Hb_002781_050 Hb_000172_280 Hb_000172_280 Hb_001148_090--Hb_000172_280 Hb_004607_070 Hb_004607_070 Hb_001148_090--Hb_004607_070 Hb_001148_090--Hb_001946_310 Hb_002539_040 Hb_002539_040 Hb_001148_090--Hb_002539_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.97978 14.3351 24.2853 52.4663 3.23028 9.14936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.134 27.0199 8.24594 36.6337 18.1104

CAGE analysis