Hb_000975_350

Information

Type -
Description -
Location Contig975: 323091-328254
Sequence    

Annotation

kegg
ID tcc:TCM_041901
description RNA binding protein, putative isoform 1
nr
ID XP_012064978.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q6AZB8
description Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
trembl
ID A0A067LAF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05660 PE=4 SV=1
Gene Ontology
ID GO:0005524
description nuclease harbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64033: 326220-326382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_350 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000215_320 0.1130094077 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_004108_220 0.1135412056 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
4 Hb_000359_090 0.1147584734 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
5 Hb_006060_020 0.1153973625 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
6 Hb_000749_050 0.1172152715 - - mitochondrial thioredoxin [Hevea brasiliensis]
7 Hb_009898_040 0.1196016898 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001369_250 0.1198064289 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
9 Hb_012262_030 0.1205799567 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
10 Hb_000367_090 0.1210881679 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
11 Hb_000625_090 0.1244804669 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000983_050 0.1254460814 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_003058_120 0.1258386778 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
14 Hb_001104_230 0.1261333163 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
15 Hb_000555_100 0.1261884095 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
16 Hb_003038_140 0.1275729499 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
17 Hb_002615_150 0.1278577003 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
18 Hb_006452_100 0.1279251564 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
19 Hb_000365_270 0.1285004118 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
20 Hb_007747_080 0.1301026257 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000975_350 Hb_000975_350 Hb_000215_320 Hb_000215_320 Hb_000975_350--Hb_000215_320 Hb_004108_220 Hb_004108_220 Hb_000975_350--Hb_004108_220 Hb_000359_090 Hb_000359_090 Hb_000975_350--Hb_000359_090 Hb_006060_020 Hb_006060_020 Hb_000975_350--Hb_006060_020 Hb_000749_050 Hb_000749_050 Hb_000975_350--Hb_000749_050 Hb_009898_040 Hb_009898_040 Hb_000975_350--Hb_009898_040 Hb_000890_150 Hb_000890_150 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000258_240 Hb_000258_240 Hb_000359_090--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000359_090--Hb_002781_030 Hb_000384_070 Hb_000384_070 Hb_000359_090--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_000359_090--Hb_002133_020 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030 Hb_000723_230 Hb_000723_230 Hb_006060_020--Hb_000723_230 Hb_006643_020 Hb_006643_020 Hb_006060_020--Hb_006643_020 Hb_006637_030 Hb_006637_030 Hb_006060_020--Hb_006637_030 Hb_026198_010 Hb_026198_010 Hb_006060_020--Hb_026198_010 Hb_053709_050 Hb_053709_050 Hb_006060_020--Hb_053709_050 Hb_000555_100 Hb_000555_100 Hb_006060_020--Hb_000555_100 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_002045_070 Hb_002045_070 Hb_000749_050--Hb_002045_070 Hb_000173_470 Hb_000173_470 Hb_000749_050--Hb_000173_470 Hb_000749_050--Hb_000890_150 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090 Hb_001946_310 Hb_001946_310 Hb_009898_040--Hb_001946_310 Hb_000402_130 Hb_000402_130 Hb_009898_040--Hb_000402_130 Hb_000889_010 Hb_000889_010 Hb_009898_040--Hb_000889_010 Hb_066842_010 Hb_066842_010 Hb_009898_040--Hb_066842_010 Hb_000025_190 Hb_000025_190 Hb_009898_040--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55294 3.4759 2.91088 6.95176 0.651717 2.12271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19683 3.44558 2.90598 4.80421 1.89931

CAGE analysis