Hb_009898_040

Information

Type -
Description -
Location Contig9898: 29363-32279
Sequence    

Annotation

kegg
ID rcu:RCOM_0179580
description hypothetical protein
nr
ID XP_002534301.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0179580 PE=4 SV=1
Gene Ontology
ID GO:0005622
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64708: 29391-32189 , PASA_asmbl_64709: 31485-31856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009898_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001946_310 0.1113539147 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
3 Hb_000402_130 0.1155612148 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_000889_010 0.1163163288 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
5 Hb_066842_010 0.1166053824 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
6 Hb_000025_190 0.1188700057 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
7 Hb_000975_350 0.1196016898 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_012305_130 0.1198295595 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
9 Hb_000046_170 0.1217238381 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
10 Hb_000928_190 0.1231854396 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
11 Hb_010560_050 0.1245799561 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
12 Hb_002615_150 0.1248963749 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
13 Hb_000136_100 0.1260602892 - - PREDICTED: syntaxin-61 [Jatropha curcas]
14 Hb_003988_050 0.1266927036 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
15 Hb_021409_080 0.1273417568 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
16 Hb_003207_020 0.1278523912 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
17 Hb_000165_080 0.1278898366 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
18 Hb_033152_070 0.129022503 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
19 Hb_010042_020 0.1291196614 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
20 Hb_004607_070 0.1294403607 - - integral membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009898_040 Hb_009898_040 Hb_001946_310 Hb_001946_310 Hb_009898_040--Hb_001946_310 Hb_000402_130 Hb_000402_130 Hb_009898_040--Hb_000402_130 Hb_000889_010 Hb_000889_010 Hb_009898_040--Hb_000889_010 Hb_066842_010 Hb_066842_010 Hb_009898_040--Hb_066842_010 Hb_000025_190 Hb_000025_190 Hb_009898_040--Hb_000025_190 Hb_000975_350 Hb_000975_350 Hb_009898_040--Hb_000975_350 Hb_000800_090 Hb_000800_090 Hb_001946_310--Hb_000800_090 Hb_001799_060 Hb_001799_060 Hb_001946_310--Hb_001799_060 Hb_001946_310--Hb_000402_130 Hb_001318_050 Hb_001318_050 Hb_001946_310--Hb_001318_050 Hb_003305_020 Hb_003305_020 Hb_001946_310--Hb_003305_020 Hb_001946_310--Hb_000025_190 Hb_005701_120 Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_002110_100 Hb_002110_100 Hb_000402_130--Hb_002110_100 Hb_003207_020 Hb_003207_020 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000402_130--Hb_000025_190 Hb_004449_180 Hb_004449_180 Hb_000889_010--Hb_004449_180 Hb_000684_520 Hb_000684_520 Hb_000889_010--Hb_000684_520 Hb_000889_010--Hb_001799_060 Hb_168893_020 Hb_168893_020 Hb_000889_010--Hb_168893_020 Hb_001148_090 Hb_001148_090 Hb_000889_010--Hb_001148_090 Hb_002392_010 Hb_002392_010 Hb_066842_010--Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_066842_010--Hb_001946_390 Hb_000590_120 Hb_000590_120 Hb_066842_010--Hb_000590_120 Hb_001269_190 Hb_001269_190 Hb_066842_010--Hb_001269_190 Hb_000185_220 Hb_000185_220 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150 Hb_000215_320 Hb_000215_320 Hb_000975_350--Hb_000215_320 Hb_004108_220 Hb_004108_220 Hb_000975_350--Hb_004108_220 Hb_000359_090 Hb_000359_090 Hb_000975_350--Hb_000359_090 Hb_006060_020 Hb_006060_020 Hb_000975_350--Hb_006060_020 Hb_000749_050 Hb_000749_050 Hb_000975_350--Hb_000749_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6388 18.5476 21.7093 72.6209 5.7611 12.3093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5399 21.1175 21.3496 41.3575 24.2932

CAGE analysis