Hb_001584_260

Information

Type -
Description -
Location Contig1584: 152814-155117
Sequence    

Annotation

kegg
ID rcu:RCOM_1436070
description zinc finger protein, putative
nr
ID XP_002512551.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID O80522
description GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1
trembl
ID B9RFN2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1436070 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g09390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13987: 152955-154889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_260 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_039021_010 0.1255299441 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
3 Hb_000913_040 0.1270869641 - - Methyltransferase-related protein, putative [Theobroma cacao]
4 Hb_000580_100 0.1288887985 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
5 Hb_001825_040 0.136689302 - - myosin XI, putative [Ricinus communis]
6 Hb_001482_050 0.1367237462 - - COR413-PM2, putative [Ricinus communis]
7 Hb_007850_030 0.1422527422 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
8 Hb_004079_130 0.1430427709 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
9 Hb_001004_140 0.147200862 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_000622_200 0.1535781364 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_005245_120 0.155165459 - - XPA-binding protein, putative [Ricinus communis]
12 Hb_001140_360 0.1557711027 - - -
13 Hb_003050_260 0.1604494874 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
14 Hb_010789_020 0.1606559659 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
15 Hb_003001_090 0.1614105791 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
16 Hb_001357_310 0.1635439095 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
17 Hb_005144_210 0.1674565671 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005146_080 0.1705301479 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
19 Hb_002693_030 0.1706406638 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
20 Hb_006060_020 0.1714747426 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_260 Hb_001584_260 Hb_039021_010 Hb_039021_010 Hb_001584_260--Hb_039021_010 Hb_000913_040 Hb_000913_040 Hb_001584_260--Hb_000913_040 Hb_000580_100 Hb_000580_100 Hb_001584_260--Hb_000580_100 Hb_001825_040 Hb_001825_040 Hb_001584_260--Hb_001825_040 Hb_001482_050 Hb_001482_050 Hb_001584_260--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_001584_260--Hb_007850_030 Hb_039021_010--Hb_000580_100 Hb_005144_210 Hb_005144_210 Hb_039021_010--Hb_005144_210 Hb_000836_300 Hb_000836_300 Hb_039021_010--Hb_000836_300 Hb_004079_130 Hb_004079_130 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310 Hb_000913_040--Hb_000580_100 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_000116_560 Hb_000116_560 Hb_000913_040--Hb_000116_560 Hb_007390_020 Hb_007390_020 Hb_000913_040--Hb_007390_020 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_005245_120 Hb_005245_120 Hb_000580_100--Hb_005245_120 Hb_000622_200 Hb_000622_200 Hb_000580_100--Hb_000622_200 Hb_004117_190 Hb_004117_190 Hb_000580_100--Hb_004117_190 Hb_000580_100--Hb_004079_130 Hb_001825_040--Hb_004079_130 Hb_002740_090 Hb_002740_090 Hb_001825_040--Hb_002740_090 Hb_000656_300 Hb_000656_300 Hb_001825_040--Hb_000656_300 Hb_004480_020 Hb_004480_020 Hb_001825_040--Hb_004480_020 Hb_001825_040--Hb_001482_050 Hb_124373_010 Hb_124373_010 Hb_001825_040--Hb_124373_010 Hb_001482_050--Hb_004079_130 Hb_001482_050--Hb_007850_030 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_133004_010 Hb_133004_010 Hb_001482_050--Hb_133004_010 Hb_000227_390 Hb_000227_390 Hb_001482_050--Hb_000227_390 Hb_001660_100 Hb_001660_100 Hb_001482_050--Hb_001660_100 Hb_002693_030 Hb_002693_030 Hb_007850_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_007850_030--Hb_053709_050 Hb_001633_090 Hb_001633_090 Hb_007850_030--Hb_001633_090 Hb_004994_210 Hb_004994_210 Hb_007850_030--Hb_004994_210 Hb_007850_030--Hb_000227_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40271 2.00706 3.81682 5.29122 1.29519 0.481394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65864 2.4066 1.24547 3.4216 0.482116

CAGE analysis