Hb_001825_040

Information

Type -
Description -
Location Contig1825: 30102-59736
Sequence    

Annotation

kegg
ID rcu:RCOM_0993090
description myosin XI, putative
nr
ID XP_002521016.1
description myosin XI, putative [Ricinus communis]
swissprot
ID F4HWY6
description Myosin-11 OS=Arabidopsis thaliana GN=XI-E PE=3 SV=1
trembl
ID B9S4V9
description Myosin XI, putative OS=Ricinus communis GN=RCOM_0993090 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-9 isoform x5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17787: 30705-31740 , PASA_asmbl_17788: 51509-51898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001825_040 0.0 - - myosin XI, putative [Ricinus communis]
2 Hb_004079_130 0.0963034846 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
3 Hb_002740_090 0.1005383732 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
4 Hb_000656_300 0.1135786691 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
5 Hb_004480_020 0.1152890734 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
6 Hb_001482_050 0.1171655255 - - COR413-PM2, putative [Ricinus communis]
7 Hb_124373_010 0.1192422616 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
8 Hb_000215_300 0.1212296835 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_000130_270 0.1227234876 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
10 Hb_039021_010 0.1232969478 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
11 Hb_012092_050 0.124473976 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
12 Hb_001141_420 0.1273358307 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
13 Hb_003540_050 0.1302317977 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
14 Hb_172426_030 0.1303099939 - - acetylglucosaminyltransferase, putative [Ricinus communis]
15 Hb_007257_060 0.1304759063 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
16 Hb_000120_810 0.131845534 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
17 Hb_001633_080 0.1323696243 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
18 Hb_000703_330 0.1333096763 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002615_150 0.1337501713 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
20 Hb_000555_100 0.1337786264 - - hypothetical protein JCGZ_14689 [Jatropha curcas]

Gene co-expression network

sample Hb_001825_040 Hb_001825_040 Hb_004079_130 Hb_004079_130 Hb_001825_040--Hb_004079_130 Hb_002740_090 Hb_002740_090 Hb_001825_040--Hb_002740_090 Hb_000656_300 Hb_000656_300 Hb_001825_040--Hb_000656_300 Hb_004480_020 Hb_004480_020 Hb_001825_040--Hb_004480_020 Hb_001482_050 Hb_001482_050 Hb_001825_040--Hb_001482_050 Hb_124373_010 Hb_124373_010 Hb_001825_040--Hb_124373_010 Hb_000120_810 Hb_000120_810 Hb_004079_130--Hb_000120_810 Hb_000227_390 Hb_000227_390 Hb_004079_130--Hb_000227_390 Hb_026198_010 Hb_026198_010 Hb_004079_130--Hb_026198_010 Hb_004079_130--Hb_001482_050 Hb_000704_030 Hb_000704_030 Hb_004079_130--Hb_000704_030 Hb_012092_050 Hb_012092_050 Hb_004079_130--Hb_012092_050 Hb_007137_050 Hb_007137_050 Hb_002740_090--Hb_007137_050 Hb_086063_020 Hb_086063_020 Hb_002740_090--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_002740_090--Hb_188063_050 Hb_000703_330 Hb_000703_330 Hb_002740_090--Hb_000703_330 Hb_001250_050 Hb_001250_050 Hb_002740_090--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_002740_090--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_000656_300--Hb_003540_050 Hb_000656_300--Hb_002740_090 Hb_001268_340 Hb_001268_340 Hb_000656_300--Hb_001268_340 Hb_000656_300--Hb_004079_130 Hb_002311_380 Hb_002311_380 Hb_000656_300--Hb_002311_380 Hb_001481_150 Hb_001481_150 Hb_004480_020--Hb_001481_150 Hb_007286_020 Hb_007286_020 Hb_004480_020--Hb_007286_020 Hb_004480_020--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_004480_020--Hb_000023_300 Hb_000085_450 Hb_000085_450 Hb_004480_020--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_004480_020--Hb_001097_040 Hb_007850_030 Hb_007850_030 Hb_001482_050--Hb_007850_030 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_133004_010 Hb_133004_010 Hb_001482_050--Hb_133004_010 Hb_001482_050--Hb_000227_390 Hb_001660_100 Hb_001660_100 Hb_001482_050--Hb_001660_100 Hb_000130_270 Hb_000130_270 Hb_124373_010--Hb_000130_270 Hb_000207_150 Hb_000207_150 Hb_124373_010--Hb_000207_150 Hb_002960_150 Hb_002960_150 Hb_124373_010--Hb_002960_150 Hb_003929_170 Hb_003929_170 Hb_124373_010--Hb_003929_170 Hb_000152_600 Hb_000152_600 Hb_124373_010--Hb_000152_600 Hb_000916_070 Hb_000916_070 Hb_124373_010--Hb_000916_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.338202 0.35535 0.57626 0.984785 0.267198 0.141529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.484407 0.368477 0.169838 0.589998 0.324684

CAGE analysis