Hb_133004_010

Information

Type -
Description -
Location Contig133004: 2-643
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18550g
description POPTRDRAFT_558898; cyclin D3-2 family protein
nr
ID XP_012079305.1
description PREDICTED: cyclin-D3-3 [Jatropha curcas]
swissprot
ID Q9FGQ7
description Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1
trembl
ID A0A067K799
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12453 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin d3-2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09463: 501-759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133004_010 0.0 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
2 Hb_000830_020 0.0875988717 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
3 Hb_001482_050 0.0981506834 - - COR413-PM2, putative [Ricinus communis]
4 Hb_001660_100 0.1005862389 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
5 Hb_006570_160 0.1023163661 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_001227_120 0.1053652082 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
7 Hb_005754_040 0.1093905219 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
8 Hb_009193_090 0.1119007234 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
9 Hb_000260_470 0.1132469561 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
10 Hb_000227_390 0.1138853327 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
11 Hb_002676_120 0.1141541013 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
12 Hb_005946_150 0.1146996895 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
13 Hb_002740_090 0.1149245422 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
14 Hb_007850_030 0.1155737574 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
15 Hb_000742_010 0.1165565407 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_159809_070 0.1178567118 - - phospholipase A-2-activating protein, putative [Ricinus communis]
17 Hb_000703_330 0.1187716665 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010407_140 0.1190802852 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
19 Hb_001279_190 0.1203287548 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
20 Hb_010381_010 0.1221450942 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_133004_010 Hb_133004_010 Hb_000830_020 Hb_000830_020 Hb_133004_010--Hb_000830_020 Hb_001482_050 Hb_001482_050 Hb_133004_010--Hb_001482_050 Hb_001660_100 Hb_001660_100 Hb_133004_010--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_133004_010--Hb_006570_160 Hb_001227_120 Hb_001227_120 Hb_133004_010--Hb_001227_120 Hb_005754_040 Hb_005754_040 Hb_133004_010--Hb_005754_040 Hb_007483_070 Hb_007483_070 Hb_000830_020--Hb_007483_070 Hb_000163_260 Hb_000163_260 Hb_000830_020--Hb_000163_260 Hb_001279_190 Hb_001279_190 Hb_000830_020--Hb_001279_190 Hb_000830_020--Hb_006570_160 Hb_000227_390 Hb_000227_390 Hb_000830_020--Hb_000227_390 Hb_004079_130 Hb_004079_130 Hb_001482_050--Hb_004079_130 Hb_007850_030 Hb_007850_030 Hb_001482_050--Hb_007850_030 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_001482_050--Hb_000227_390 Hb_001482_050--Hb_001660_100 Hb_001660_100--Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001369_300 Hb_001369_300 Hb_001660_100--Hb_001369_300 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_006570_160--Hb_000260_470 Hb_011282_060 Hb_011282_060 Hb_006570_160--Hb_011282_060 Hb_006570_160--Hb_005271_040 Hb_010407_140 Hb_010407_140 Hb_006570_160--Hb_010407_140 Hb_002676_120 Hb_002676_120 Hb_006570_160--Hb_002676_120 Hb_000666_100 Hb_000666_100 Hb_006570_160--Hb_000666_100 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010 Hb_000395_280 Hb_000395_280 Hb_005754_040--Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_005754_040--Hb_003605_020 Hb_005754_040--Hb_002676_120 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35811 1.59759 5.36237 4.45797 1.30207 2.35127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87175 1.69231 1.45332 4.19556 1.96242

CAGE analysis