Hb_002676_120

Information

Type -
Description -
Location Contig2676: 159122-164637
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23750g
description POPTRDRAFT_816877; hypothetical protein
nr
ID XP_002303010.1
description hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GNE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23750g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27881: 159772-161654 , PASA_asmbl_27883: 161996-162704 , PASA_asmbl_27885: 163603-164682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002676_120 0.0 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
2 Hb_000987_040 0.0666091161 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
3 Hb_009193_090 0.0820772251 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
4 Hb_006570_160 0.0895282572 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
5 Hb_000395_280 0.0911812927 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
6 Hb_005754_040 0.0959986227 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
7 Hb_005333_060 0.0974537619 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
8 Hb_010407_140 0.0977943571 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
9 Hb_001633_080 0.0983536748 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
10 Hb_011282_060 0.0987369099 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
11 Hb_004228_120 0.1010729561 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
12 Hb_004586_150 0.1025392871 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
13 Hb_159809_070 0.1083951169 - - phospholipase A-2-activating protein, putative [Ricinus communis]
14 Hb_001227_120 0.1109119613 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
15 Hb_133004_010 0.1141541013 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
16 Hb_004064_040 0.1154808455 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
17 Hb_000963_040 0.1164489204 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
18 Hb_000007_390 0.1168048688 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
19 Hb_010381_010 0.1170927324 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_002351_030 0.1171311634 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_002676_120 Hb_002676_120 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_009193_090 Hb_009193_090 Hb_002676_120--Hb_009193_090 Hb_006570_160 Hb_006570_160 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_005754_040 Hb_005754_040 Hb_002676_120--Hb_005754_040 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_000987_040--Hb_005333_060 Hb_002783_220 Hb_002783_220 Hb_000987_040--Hb_002783_220 Hb_000987_040--Hb_005754_040 Hb_001633_200 Hb_001633_200 Hb_000987_040--Hb_001633_200 Hb_004125_010 Hb_004125_010 Hb_000987_040--Hb_004125_010 Hb_007545_120 Hb_007545_120 Hb_009193_090--Hb_007545_120 Hb_001633_080 Hb_001633_080 Hb_009193_090--Hb_001633_080 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_009193_090--Hb_006570_160 Hb_000260_470 Hb_000260_470 Hb_006570_160--Hb_000260_470 Hb_011282_060 Hb_011282_060 Hb_006570_160--Hb_011282_060 Hb_005271_040 Hb_005271_040 Hb_006570_160--Hb_005271_040 Hb_010407_140 Hb_010407_140 Hb_006570_160--Hb_010407_140 Hb_000666_100 Hb_000666_100 Hb_006570_160--Hb_000666_100 Hb_003605_020 Hb_003605_020 Hb_000395_280--Hb_003605_020 Hb_000395_280--Hb_005754_040 Hb_065968_010 Hb_065968_010 Hb_000395_280--Hb_065968_010 Hb_001957_010 Hb_001957_010 Hb_000395_280--Hb_001957_010 Hb_002552_040 Hb_002552_040 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_005754_040--Hb_003605_020 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030 Hb_000739_240 Hb_000739_240 Hb_005333_060--Hb_000739_240 Hb_005333_060--Hb_002783_220 Hb_094121_010 Hb_094121_010 Hb_005333_060--Hb_094121_010 Hb_005333_060--Hb_006775_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.815865 0.342235 2.18486 2.03507 0.75971 0.949046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.637172 0.734616 0.86963 1.5634 0.820702

CAGE analysis