Hb_004125_010

Information

Type -
Description -
Location Contig4125: 4304-8218
Sequence    

Annotation

kegg
ID rcu:RCOM_1168950
description hypothetical protein
nr
ID XP_012069872.1
description PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L779
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40816: 4136-6047 , PASA_asmbl_40817: 6113-7990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_010 0.0 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
2 Hb_000035_080 0.106796794 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
3 Hb_000987_040 0.1170042928 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
4 Hb_002783_220 0.1201347067 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
5 Hb_000000_330 0.1208717175 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
6 Hb_002028_190 0.123742116 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
7 Hb_000656_160 0.1247489982 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
8 Hb_004228_120 0.1279887094 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
9 Hb_000258_220 0.1297252567 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
10 Hb_005333_060 0.1314010344 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
11 Hb_161568_010 0.1347714451 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_000331_140 0.1352237489 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
13 Hb_002676_120 0.137808485 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
14 Hb_016347_020 0.1443967296 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_001450_020 0.1462424658 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
16 Hb_007786_030 0.1469170918 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
17 Hb_030736_060 0.1469708364 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
18 Hb_074399_010 0.1473834668 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
19 Hb_000497_190 0.1478955767 - - sterol isomerase, putative [Ricinus communis]
20 Hb_164010_050 0.148316286 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]

Gene co-expression network

sample Hb_004125_010 Hb_004125_010 Hb_000035_080 Hb_000035_080 Hb_004125_010--Hb_000035_080 Hb_000987_040 Hb_000987_040 Hb_004125_010--Hb_000987_040 Hb_002783_220 Hb_002783_220 Hb_004125_010--Hb_002783_220 Hb_000000_330 Hb_000000_330 Hb_004125_010--Hb_000000_330 Hb_002028_190 Hb_002028_190 Hb_004125_010--Hb_002028_190 Hb_000656_160 Hb_000656_160 Hb_004125_010--Hb_000656_160 Hb_074399_010 Hb_074399_010 Hb_000035_080--Hb_074399_010 Hb_000035_080--Hb_002783_220 Hb_000258_220 Hb_000258_220 Hb_000035_080--Hb_000258_220 Hb_000668_060 Hb_000668_060 Hb_000035_080--Hb_000668_060 Hb_000035_080--Hb_000000_330 Hb_002676_120 Hb_002676_120 Hb_000987_040--Hb_002676_120 Hb_005333_060 Hb_005333_060 Hb_000987_040--Hb_005333_060 Hb_000987_040--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000987_040--Hb_005754_040 Hb_001633_200 Hb_001633_200 Hb_000987_040--Hb_001633_200 Hb_006775_120 Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_002783_220--Hb_000000_330 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_000000_330--Hb_074399_010 Hb_000000_330--Hb_006775_120 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_000003_030 Hb_000003_030 Hb_000000_330--Hb_000003_030 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050 Hb_004223_140 Hb_004223_140 Hb_002028_190--Hb_004223_140 Hb_000009_060 Hb_000009_060 Hb_002028_190--Hb_000009_060 Hb_004228_120 Hb_004228_120 Hb_002028_190--Hb_004228_120 Hb_002552_040 Hb_002552_040 Hb_002028_190--Hb_002552_040 Hb_018845_010 Hb_018845_010 Hb_002028_190--Hb_018845_010 Hb_001616_070 Hb_001616_070 Hb_002028_190--Hb_001616_070 Hb_000371_090 Hb_000371_090 Hb_000656_160--Hb_000371_090 Hb_000066_030 Hb_000066_030 Hb_000656_160--Hb_000066_030 Hb_000656_160--Hb_002028_190 Hb_003777_200 Hb_003777_200 Hb_000656_160--Hb_003777_200 Hb_000656_160--Hb_000258_220 Hb_003998_040 Hb_003998_040 Hb_000656_160--Hb_003998_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.811762 0.569486 2.43786 2.14255 0.523159 0.887988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.188526 0.296706 0.826633 1.2166 0.605808

CAGE analysis