Hb_000656_160

Information

Type -
Description -
Location Contig656: 104943-110064
Sequence    

Annotation

kegg
ID rcu:RCOM_0392150
description ptm1, putative
nr
ID XP_012068854.1
description PREDICTED: transmembrane protein 87A [Jatropha curcas]
swissprot
ID Q28EW0
description Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1
trembl
ID A0A067KWU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24675 PE=4 SV=1
Gene Ontology
ID GO:0005794
description transmembrane protein 87a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52718: 104999-109874 , PASA_asmbl_52721: 110970-115064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_160 0.0 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
2 Hb_000371_090 0.0859552956 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
3 Hb_000066_030 0.0954226473 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
4 Hb_002028_190 0.1052175646 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
5 Hb_003777_200 0.1073983105 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
6 Hb_000258_220 0.1078620523 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
7 Hb_003998_040 0.1086277748 - - organic anion transporter, putative [Ricinus communis]
8 Hb_000261_210 0.1107990274 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_000054_040 0.1130124751 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
10 Hb_011214_160 0.1152501935 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
11 Hb_012194_060 0.1157827381 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
12 Hb_030982_010 0.1176761982 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007765_040 0.1180071728 - - Cytosolic enolase isoform 3 [Theobroma cacao]
14 Hb_002351_030 0.1180955385 - - catalytic, putative [Ricinus communis]
15 Hb_002473_050 0.1182401805 - - catalytic, putative [Ricinus communis]
16 Hb_004228_120 0.1184833841 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
17 Hb_000197_020 0.1198783418 - - PREDICTED: protein RER1A [Jatropha curcas]
18 Hb_000035_220 0.1219694139 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
19 Hb_003994_220 0.1223870799 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
20 Hb_000300_600 0.1231976996 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000656_160 Hb_000656_160 Hb_000371_090 Hb_000371_090 Hb_000656_160--Hb_000371_090 Hb_000066_030 Hb_000066_030 Hb_000656_160--Hb_000066_030 Hb_002028_190 Hb_002028_190 Hb_000656_160--Hb_002028_190 Hb_003777_200 Hb_003777_200 Hb_000656_160--Hb_003777_200 Hb_000258_220 Hb_000258_220 Hb_000656_160--Hb_000258_220 Hb_003998_040 Hb_003998_040 Hb_000656_160--Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_011214_160 Hb_011214_160 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000371_090--Hb_000066_030 Hb_000066_030--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000066_030--Hb_005218_020 Hb_000197_020 Hb_000197_020 Hb_000066_030--Hb_000197_020 Hb_007765_040 Hb_007765_040 Hb_000066_030--Hb_007765_040 Hb_000066_030--Hb_011214_160 Hb_004223_140 Hb_004223_140 Hb_002028_190--Hb_004223_140 Hb_000009_060 Hb_000009_060 Hb_002028_190--Hb_000009_060 Hb_004228_120 Hb_004228_120 Hb_002028_190--Hb_004228_120 Hb_002552_040 Hb_002552_040 Hb_002028_190--Hb_002552_040 Hb_018845_010 Hb_018845_010 Hb_002028_190--Hb_018845_010 Hb_001616_070 Hb_001616_070 Hb_002028_190--Hb_001616_070 Hb_000317_040 Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_003777_200--Hb_000300_600 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_001507_120 Hb_001507_120 Hb_003777_200--Hb_001507_120 Hb_029584_120 Hb_029584_120 Hb_000258_220--Hb_029584_120 Hb_000134_120 Hb_000134_120 Hb_000258_220--Hb_000134_120 Hb_000503_020 Hb_000503_020 Hb_000258_220--Hb_000503_020 Hb_074399_010 Hb_074399_010 Hb_000258_220--Hb_074399_010 Hb_000054_040 Hb_000054_040 Hb_000258_220--Hb_000054_040 Hb_003540_080 Hb_003540_080 Hb_000258_220--Hb_003540_080 Hb_003998_040--Hb_005218_020 Hb_003998_040--Hb_011214_160 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74918 4.26375 14.2002 21.0873 6.90032 8.44158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10551 2.39334 8.99441 9.55034 8.25395

CAGE analysis