Hb_000184_070

Information

Type -
Description -
Location Contig184: 77968-83703
Sequence    

Annotation

kegg
ID rcu:RCOM_0691130
description hypothetical protein
nr
ID XP_012081507.1
description PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18521 PE=4 SV=1
Gene Ontology
ID GO:0003824
description rubisco methyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17984: 79000-79546 , PASA_asmbl_17985: 78037-83194 , PASA_asmbl_17986: 80469-80693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_070 0.0 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
2 Hb_000352_300 0.0648448624 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
3 Hb_001789_030 0.0718142354 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
4 Hb_001703_050 0.0727334491 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
5 Hb_000163_090 0.0728992866 - - gamma-tubulin complex component, putative [Ricinus communis]
6 Hb_000371_090 0.073671101 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
7 Hb_002675_030 0.0821372146 - - coatomer beta subunit, putative [Ricinus communis]
8 Hb_008511_020 0.0836973128 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
9 Hb_003998_040 0.0839293835 - - organic anion transporter, putative [Ricinus communis]
10 Hb_009569_040 0.085483612 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
11 Hb_000161_210 0.0855917592 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
12 Hb_003671_010 0.0879675325 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
13 Hb_000787_060 0.088301545 - - thioredoxin domain-containing protein, putative [Ricinus communis]
14 Hb_007481_010 0.0894759272 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
15 Hb_000261_210 0.0901350835 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_010294_010 0.0909584077 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
17 Hb_003528_030 0.0913948822 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
18 Hb_000960_040 0.092097526 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
19 Hb_000903_010 0.0922145021 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
20 Hb_030982_010 0.092659435 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000184_070 Hb_000184_070 Hb_000352_300 Hb_000352_300 Hb_000184_070--Hb_000352_300 Hb_001789_030 Hb_001789_030 Hb_000184_070--Hb_001789_030 Hb_001703_050 Hb_001703_050 Hb_000184_070--Hb_001703_050 Hb_000163_090 Hb_000163_090 Hb_000184_070--Hb_000163_090 Hb_000371_090 Hb_000371_090 Hb_000184_070--Hb_000371_090 Hb_002675_030 Hb_002675_030 Hb_000184_070--Hb_002675_030 Hb_007481_010 Hb_007481_010 Hb_000352_300--Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_000352_300--Hb_003528_030 Hb_000477_100 Hb_000477_100 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_001789_030--Hb_000163_090 Hb_001789_030--Hb_000352_300 Hb_000637_150 Hb_000637_150 Hb_001789_030--Hb_000637_150 Hb_001584_140 Hb_001584_140 Hb_001789_030--Hb_001584_140 Hb_001009_320 Hb_001009_320 Hb_001789_030--Hb_001009_320 Hb_001269_600 Hb_001269_600 Hb_001703_050--Hb_001269_600 Hb_003994_220 Hb_003994_220 Hb_001703_050--Hb_003994_220 Hb_065500_020 Hb_065500_020 Hb_001703_050--Hb_065500_020 Hb_011214_160 Hb_011214_160 Hb_001703_050--Hb_011214_160 Hb_001703_050--Hb_000352_300 Hb_001518_080 Hb_001518_080 Hb_000163_090--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000163_090--Hb_001377_310 Hb_008511_020 Hb_008511_020 Hb_000163_090--Hb_008511_020 Hb_030982_010 Hb_030982_010 Hb_000163_090--Hb_030982_010 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030 Hb_002675_030--Hb_008511_020 Hb_001440_020 Hb_001440_020 Hb_002675_030--Hb_001440_020 Hb_000579_240 Hb_000579_240 Hb_002675_030--Hb_000579_240 Hb_000960_040 Hb_000960_040 Hb_002675_030--Hb_000960_040 Hb_001821_150 Hb_001821_150 Hb_002675_030--Hb_001821_150 Hb_000264_350 Hb_000264_350 Hb_002675_030--Hb_000264_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52962 1.90944 4.11775 6.74152 3.99936 3.88148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70928 2.17114 2.81029 4.68375 4.15886

CAGE analysis