Hb_000818_100

Information

Type -
Description -
Location Contig818: 180839-183168
Sequence    

Annotation

kegg
ID rcu:RCOM_1386000
description Cell elongation protein diminuto, putative
nr
ID XP_012072982.1
description PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
swissprot
ID P93472
description Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1
trembl
ID B9S3N5
description Cell elongation protein diminuto, putative OS=Ricinus communis GN=RCOM_1386000 PE=4 SV=1
Gene Ontology
ID GO:0005774
description delta -sterol reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59513: 178345-183166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000818_100 0.0 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
2 Hb_029695_050 0.1004484031 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
3 Hb_009247_010 0.1148782109 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
4 Hb_009222_070 0.1220772754 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
5 Hb_000503_020 0.1302149777 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
6 Hb_000098_050 0.1395625283 - - BnaCnng11900D [Brassica napus]
7 Hb_000134_120 0.1410205263 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
8 Hb_030736_060 0.1414876752 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
9 Hb_005062_110 0.1417322456 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
10 Hb_000630_030 0.1421573205 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
11 Hb_000258_220 0.1434027225 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
12 Hb_083628_010 0.1448435265 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
13 Hb_000054_040 0.1469216805 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
14 Hb_135757_010 0.1471688365 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
15 Hb_133230_010 0.148047336 - - hypothetical protein L484_001846 [Morus notabilis]
16 Hb_003605_040 0.148057176 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
17 Hb_001159_030 0.149064009 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
18 Hb_000805_210 0.1528987534 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
19 Hb_000085_260 0.1534919597 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_000320_290 0.1548538911 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]

Gene co-expression network

sample Hb_000818_100 Hb_000818_100 Hb_029695_050 Hb_029695_050 Hb_000818_100--Hb_029695_050 Hb_009247_010 Hb_009247_010 Hb_000818_100--Hb_009247_010 Hb_009222_070 Hb_009222_070 Hb_000818_100--Hb_009222_070 Hb_000503_020 Hb_000503_020 Hb_000818_100--Hb_000503_020 Hb_000098_050 Hb_000098_050 Hb_000818_100--Hb_000098_050 Hb_000134_120 Hb_000134_120 Hb_000818_100--Hb_000134_120 Hb_011930_150 Hb_011930_150 Hb_029695_050--Hb_011930_150 Hb_135757_010 Hb_135757_010 Hb_029695_050--Hb_135757_010 Hb_030736_060 Hb_030736_060 Hb_029695_050--Hb_030736_060 Hb_000371_090 Hb_000371_090 Hb_029695_050--Hb_000371_090 Hb_007786_030 Hb_007786_030 Hb_029695_050--Hb_007786_030 Hb_009247_010--Hb_000098_050 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_009247_010--Hb_000890_030 Hb_009247_010--Hb_009222_070 Hb_000805_210 Hb_000805_210 Hb_009222_070--Hb_000805_210 Hb_009393_200 Hb_009393_200 Hb_009222_070--Hb_009393_200 Hb_083628_010 Hb_083628_010 Hb_009222_070--Hb_083628_010 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_001623_110 Hb_001623_110 Hb_009222_070--Hb_001623_110 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_000098_050--Hb_000320_290 Hb_000098_050--Hb_005062_110 Hb_000098_050--Hb_000085_260 Hb_000098_050--Hb_000890_030 Hb_044486_020 Hb_044486_020 Hb_000098_050--Hb_044486_020 Hb_000258_220 Hb_000258_220 Hb_000134_120--Hb_000258_220 Hb_003209_130 Hb_003209_130 Hb_000134_120--Hb_003209_130 Hb_003964_080 Hb_003964_080 Hb_000134_120--Hb_003964_080 Hb_029584_120 Hb_029584_120 Hb_000134_120--Hb_029584_120 Hb_007919_110 Hb_007919_110 Hb_000134_120--Hb_007919_110 Hb_000926_340 Hb_000926_340 Hb_000134_120--Hb_000926_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8696 37.8225 62.3321 123.87 31.939 43.621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67164 3.48402 17.8937 40.7335 23.2315

CAGE analysis