Hb_002662_040

Information

Type -
Description -
Location Contig2662: 49691-51549
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02400g
description hypothetical protein
nr
ID XP_012068296.1
description PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
swissprot
ID P0C7P8
description Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1
trembl
ID A0A067KZR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16098 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase wnk-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27809: 49683-51612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_040 0.0 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
2 Hb_000526_010 0.1377324521 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
3 Hb_004163_030 0.1391279559 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
4 Hb_006634_100 0.1493556946 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000244_150 0.1656022358 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
6 Hb_000935_080 0.1669199515 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_011828_040 0.1752354152 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
8 Hb_006289_020 0.1780307981 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
9 Hb_006951_030 0.1789357665 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
10 Hb_000960_090 0.1810692911 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001780_030 0.1826123094 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_008725_070 0.1864984471 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
13 Hb_004155_020 0.1921213586 transcription factor TF Family: MYB myb, putative [Ricinus communis]
14 Hb_000320_260 0.1921742329 - - unnamed protein product [Vitis vinifera]
15 Hb_000088_240 0.193661228 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_031284_030 0.1939594609 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000230_190 0.1944419692 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
18 Hb_002965_160 0.1952667541 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
19 Hb_008279_030 0.197791724 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001123_310 0.1985879695 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_002662_040 Hb_002662_040 Hb_000526_010 Hb_000526_010 Hb_002662_040--Hb_000526_010 Hb_004163_030 Hb_004163_030 Hb_002662_040--Hb_004163_030 Hb_006634_100 Hb_006634_100 Hb_002662_040--Hb_006634_100 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_000935_080 Hb_000935_080 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_000526_010--Hb_004163_030 Hb_000526_010--Hb_011828_040 Hb_007426_220 Hb_007426_220 Hb_000526_010--Hb_007426_220 Hb_004155_020 Hb_004155_020 Hb_000526_010--Hb_004155_020 Hb_002783_220 Hb_002783_220 Hb_000526_010--Hb_002783_220 Hb_001141_050 Hb_001141_050 Hb_004163_030--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_004163_030--Hb_000230_190 Hb_004163_030--Hb_006634_100 Hb_004163_030--Hb_004155_020 Hb_006634_100--Hb_000935_080 Hb_003050_360 Hb_003050_360 Hb_006634_100--Hb_003050_360 Hb_005622_020 Hb_005622_020 Hb_006634_100--Hb_005622_020 Hb_006951_030 Hb_006951_030 Hb_006634_100--Hb_006951_030 Hb_001780_030 Hb_001780_030 Hb_000244_150--Hb_001780_030 Hb_001322_160 Hb_001322_160 Hb_000244_150--Hb_001322_160 Hb_013726_010 Hb_013726_010 Hb_000244_150--Hb_013726_010 Hb_000028_490 Hb_000028_490 Hb_000244_150--Hb_000028_490 Hb_004531_080 Hb_004531_080 Hb_000244_150--Hb_004531_080 Hb_000088_240 Hb_000088_240 Hb_000935_080--Hb_000088_240 Hb_000941_060 Hb_000941_060 Hb_000935_080--Hb_000941_060 Hb_000935_080--Hb_006951_030 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_000935_080--Hb_004163_030 Hb_002205_140 Hb_002205_140 Hb_011828_040--Hb_002205_140 Hb_011828_040--Hb_004155_020 Hb_001232_090 Hb_001232_090 Hb_011828_040--Hb_001232_090 Hb_003813_060 Hb_003813_060 Hb_011828_040--Hb_003813_060 Hb_000406_030 Hb_000406_030 Hb_011828_040--Hb_000406_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.368618 0.718516 9.25525 6.16651 0.39242 0.849668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151271 0.297493 2.55314 1.55951 2.0382

CAGE analysis