Hb_011828_040

Information

Type -
Description -
Location Contig11828: 65999-70496
Sequence    

Annotation

kegg
ID rcu:RCOM_0819620
description hypothetical protein
nr
ID XP_012082286.1
description PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SGR3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0819620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05454: 65879-66834 , PASA_asmbl_05455: 66847-68570 , PASA_asmbl_05456: 68930-69326 , PASA_asmbl_05457: 69722-70191 , PASA_asmbl_05458: 70247-70872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011828_040 0.0 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
2 Hb_000526_010 0.1137354572 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
3 Hb_002205_140 0.1311995176 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
4 Hb_004155_020 0.1413293811 transcription factor TF Family: MYB myb, putative [Ricinus communis]
5 Hb_001232_090 0.144327977 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
6 Hb_003813_060 0.1444925361 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000406_030 0.1457159854 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
8 Hb_004163_030 0.1476218368 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
9 Hb_013405_070 0.1517139998 - - ferric-chelate reductase, putative [Ricinus communis]
10 Hb_003894_030 0.1527940779 - - plant sec1, putative [Ricinus communis]
11 Hb_002783_220 0.1531660463 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
12 Hb_005903_020 0.1598497496 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
13 Hb_007426_220 0.1606033666 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
14 Hb_000364_170 0.1621562243 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
15 Hb_027402_020 0.1629110705 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
16 Hb_006775_120 0.1636005349 - - exonuclease-like protein [Oryza sativa Japonica Group]
17 Hb_000000_330 0.1662305349 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
18 Hb_000260_650 0.1677313928 - - PREDICTED: protein PFC0760c [Jatropha curcas]
19 Hb_001155_050 0.1681497664 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
20 Hb_011004_050 0.1684125605 - - PREDICTED: kinesin-13A [Jatropha curcas]

Gene co-expression network

sample Hb_011828_040 Hb_011828_040 Hb_000526_010 Hb_000526_010 Hb_011828_040--Hb_000526_010 Hb_002205_140 Hb_002205_140 Hb_011828_040--Hb_002205_140 Hb_004155_020 Hb_004155_020 Hb_011828_040--Hb_004155_020 Hb_001232_090 Hb_001232_090 Hb_011828_040--Hb_001232_090 Hb_003813_060 Hb_003813_060 Hb_011828_040--Hb_003813_060 Hb_000406_030 Hb_000406_030 Hb_011828_040--Hb_000406_030 Hb_004163_030 Hb_004163_030 Hb_000526_010--Hb_004163_030 Hb_007426_220 Hb_007426_220 Hb_000526_010--Hb_007426_220 Hb_000526_010--Hb_004155_020 Hb_002783_220 Hb_002783_220 Hb_000526_010--Hb_002783_220 Hb_002662_040 Hb_002662_040 Hb_000526_010--Hb_002662_040 Hb_000676_020 Hb_000676_020 Hb_002205_140--Hb_000676_020 Hb_000364_170 Hb_000364_170 Hb_002205_140--Hb_000364_170 Hb_019654_050 Hb_019654_050 Hb_002205_140--Hb_019654_050 Hb_011381_040 Hb_011381_040 Hb_002205_140--Hb_011381_040 Hb_013405_070 Hb_013405_070 Hb_002205_140--Hb_013405_070 Hb_027506_040 Hb_027506_040 Hb_002205_140--Hb_027506_040 Hb_004155_020--Hb_001232_090 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_000563_440 Hb_000563_440 Hb_004155_020--Hb_000563_440 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_001232_090--Hb_000406_030 Hb_001232_090--Hb_011381_040 Hb_004223_140 Hb_004223_140 Hb_003813_060--Hb_004223_140 Hb_006711_090 Hb_006711_090 Hb_003813_060--Hb_006711_090 Hb_004032_210 Hb_004032_210 Hb_003813_060--Hb_004032_210 Hb_003894_030 Hb_003894_030 Hb_003813_060--Hb_003894_030 Hb_000940_210 Hb_000940_210 Hb_003813_060--Hb_000940_210 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.74433 0.565527 5.08479 3.40406 0.11593 0.610043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.565688 0.844193 1.37253 1.32357 1.17199

CAGE analysis