Hb_004163_030

Information

Type -
Description -
Location Contig4163: 48123-49385
Sequence    

Annotation

kegg
ID rcu:RCOM_1586670
description hypothetical protein
nr
ID XP_012068183.1
description PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
swissprot
ID Q9SY57
description Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1
trembl
ID A0A067KZI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15999 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41206: 48015-49637
cDNA
(Sanger)
(ID:Location)		 020_I06.ab1: 48049-48761

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004163_030 0.0 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
2 Hb_000526_010 0.0974294778 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
3 Hb_001141_050 0.1200274548 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
4 Hb_000230_190 0.1324585603 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
5 Hb_006634_100 0.13779453 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004155_020 0.138066476 transcription factor TF Family: MYB myb, putative [Ricinus communis]
7 Hb_002662_040 0.1391279559 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
8 Hb_000088_240 0.1411487613 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001160_110 0.1416691174 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
10 Hb_000032_200 0.1425711241 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_000935_080 0.1443628868 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_011828_040 0.1476218368 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
13 Hb_000032_410 0.147745941 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
14 Hb_007426_220 0.1482895497 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
15 Hb_003160_070 0.150369181 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
16 Hb_003894_030 0.1516343573 - - plant sec1, putative [Ricinus communis]
17 Hb_001198_080 0.1521757471 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
18 Hb_001377_530 0.1535752949 - - NC domain-containing family protein [Populus trichocarpa]
19 Hb_001922_110 0.1567781077 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004195_140 0.1570050145 - - Sec14 cytosolic factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004163_030 Hb_004163_030 Hb_000526_010 Hb_000526_010 Hb_004163_030--Hb_000526_010 Hb_001141_050 Hb_001141_050 Hb_004163_030--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_004163_030--Hb_000230_190 Hb_006634_100 Hb_006634_100 Hb_004163_030--Hb_006634_100 Hb_004155_020 Hb_004155_020 Hb_004163_030--Hb_004155_020 Hb_002662_040 Hb_002662_040 Hb_004163_030--Hb_002662_040 Hb_011828_040 Hb_011828_040 Hb_000526_010--Hb_011828_040 Hb_007426_220 Hb_007426_220 Hb_000526_010--Hb_007426_220 Hb_000526_010--Hb_004155_020 Hb_002783_220 Hb_002783_220 Hb_000526_010--Hb_002783_220 Hb_000526_010--Hb_002662_040 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_000230_190--Hb_006133_020 Hb_000230_190--Hb_001141_050 Hb_003020_190 Hb_003020_190 Hb_000230_190--Hb_003020_190 Hb_001377_530 Hb_001377_530 Hb_000230_190--Hb_001377_530 Hb_000958_120 Hb_000958_120 Hb_000230_190--Hb_000958_120 Hb_000069_300 Hb_000069_300 Hb_000230_190--Hb_000069_300 Hb_000935_080 Hb_000935_080 Hb_006634_100--Hb_000935_080 Hb_003050_360 Hb_003050_360 Hb_006634_100--Hb_003050_360 Hb_005622_020 Hb_005622_020 Hb_006634_100--Hb_005622_020 Hb_006634_100--Hb_002662_040 Hb_006951_030 Hb_006951_030 Hb_006634_100--Hb_006951_030 Hb_001232_090 Hb_001232_090 Hb_004155_020--Hb_001232_090 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_000563_440 Hb_000563_440 Hb_004155_020--Hb_000563_440 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_002662_040--Hb_000935_080 Hb_002662_040--Hb_011828_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37212 5.98401 33.5208 16.4969 1.25825 2.7697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83228 1.29121 6.21626 4.69902 8.53744

CAGE analysis