Hb_000244_150

Information

Type -
Description -
Location Contig244: 194319-199164
Sequence    

Annotation

kegg
ID rcu:RCOM_1460830
description chromatin assembly factor I P60 subunit, putative
nr
ID XP_012079627.1
description PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
swissprot
ID Q9SXY1
description Chromatin assembly factor 1 subunit FAS2 OS=Arabidopsis thaliana GN=FAS2 PE=1 SV=1
trembl
ID A0A067K9U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14936 PE=4 SV=1
Gene Ontology
ID GO:0009888
description chromatin assembly factor 1 subunit fas2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25462: 192843-193401 , PASA_asmbl_25463: 196713-198770 , PASA_asmbl_25464: 198779-199116 , PASA_asmbl_25465: 199144-200351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_150 0.0 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
2 Hb_001780_030 0.1294658122 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
3 Hb_002662_040 0.1656022358 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
4 Hb_001322_160 0.1876126667 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
5 Hb_013726_010 0.1913570998 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000028_490 0.1918025904 - - calmodulin-like protein 6a [Populus trichocarpa]
7 Hb_004531_080 0.1925362491 - - hypothetical protein RCOM_1491960 [Ricinus communis]
8 Hb_000960_090 0.1963416583 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000032_250 0.1972911442 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
10 Hb_002284_260 0.1991486339 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
11 Hb_011861_040 0.2001022682 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
12 Hb_000088_240 0.2029506666 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000483_080 0.2037564449 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
14 Hb_093458_020 0.2043700166 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
15 Hb_004650_030 0.20491137 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
16 Hb_011828_040 0.2058992763 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
17 Hb_008725_070 0.2074607015 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
18 Hb_000012_320 0.2086660231 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
19 Hb_028872_160 0.2088848348 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
20 Hb_000077_110 0.2093502336 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]

Gene co-expression network

sample Hb_000244_150 Hb_000244_150 Hb_001780_030 Hb_001780_030 Hb_000244_150--Hb_001780_030 Hb_002662_040 Hb_002662_040 Hb_000244_150--Hb_002662_040 Hb_001322_160 Hb_001322_160 Hb_000244_150--Hb_001322_160 Hb_013726_010 Hb_013726_010 Hb_000244_150--Hb_013726_010 Hb_000028_490 Hb_000028_490 Hb_000244_150--Hb_000028_490 Hb_004531_080 Hb_004531_080 Hb_000244_150--Hb_004531_080 Hb_001780_030--Hb_000028_490 Hb_000483_080 Hb_000483_080 Hb_001780_030--Hb_000483_080 Hb_001780_030--Hb_001322_160 Hb_008725_070 Hb_008725_070 Hb_001780_030--Hb_008725_070 Hb_000077_110 Hb_000077_110 Hb_001780_030--Hb_000077_110 Hb_000526_010 Hb_000526_010 Hb_002662_040--Hb_000526_010 Hb_004163_030 Hb_004163_030 Hb_002662_040--Hb_004163_030 Hb_006634_100 Hb_006634_100 Hb_002662_040--Hb_006634_100 Hb_000935_080 Hb_000935_080 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_020301_020 Hb_020301_020 Hb_001322_160--Hb_020301_020 Hb_000661_150 Hb_000661_150 Hb_001322_160--Hb_000661_150 Hb_000003_060 Hb_000003_060 Hb_001322_160--Hb_000003_060 Hb_002284_260 Hb_002284_260 Hb_001322_160--Hb_002284_260 Hb_007632_210 Hb_007632_210 Hb_001322_160--Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_001322_160--Hb_005183_150 Hb_000032_250 Hb_000032_250 Hb_013726_010--Hb_000032_250 Hb_004545_070 Hb_004545_070 Hb_013726_010--Hb_004545_070 Hb_002072_040 Hb_002072_040 Hb_013726_010--Hb_002072_040 Hb_001675_170 Hb_001675_170 Hb_013726_010--Hb_001675_170 Hb_008143_060 Hb_008143_060 Hb_013726_010--Hb_008143_060 Hb_008695_150 Hb_008695_150 Hb_013726_010--Hb_008695_150 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_002871_130 Hb_002871_130 Hb_004531_080--Hb_002871_130 Hb_007943_180 Hb_007943_180 Hb_004531_080--Hb_007943_180 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_004007_130 Hb_004007_130 Hb_004531_080--Hb_004007_130 Hb_001123_310 Hb_001123_310 Hb_004531_080--Hb_001123_310 Hb_004531_080--Hb_000483_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250118 0.111349 2.86184 2.18574 0 0.259538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537531 0.0422917 0.558798 1.15444 0.666954

CAGE analysis