Hb_000028_490

Information

Type -
Description -
Location Contig28: 478477-479922
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05230g
description calmodulin-like protein 6a
nr
ID XP_006374229.1
description calmodulin-like protein 6a [Populus trichocarpa]
swissprot
ID P27161
description Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2
trembl
ID B9N3A0
description Calmodulin-like protein 6a OS=Populus trichocarpa GN=POPTR_0015s05230g PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29231: 478512-479845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_490 0.0 - - calmodulin-like protein 6a [Populus trichocarpa]
2 Hb_001780_030 0.1198191646 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
3 Hb_127416_010 0.1389382963 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
4 Hb_183086_070 0.1432074654 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
5 Hb_005333_080 0.1438124119 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000032_250 0.1445732334 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
7 Hb_007044_220 0.1457802991 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
8 Hb_001348_010 0.1467649923 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
9 Hb_000540_160 0.1526047849 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
10 Hb_012395_050 0.157106838 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
11 Hb_000046_240 0.1579635602 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
12 Hb_158092_040 0.1598028748 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
13 Hb_179960_010 0.1660643109 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
14 Hb_000997_240 0.1704869803 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
15 Hb_012760_090 0.1716244557 - - Aspartic proteinase-like protein 1 [Morus notabilis]
16 Hb_010672_050 0.1728646813 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
17 Hb_002292_080 0.1729038619 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_003728_110 0.1744872016 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
19 Hb_008725_070 0.1747084531 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
20 Hb_003540_120 0.1757099614 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_490 Hb_000028_490 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_000244_150 Hb_000244_150 Hb_001780_030--Hb_000244_150 Hb_000483_080 Hb_000483_080 Hb_001780_030--Hb_000483_080 Hb_001322_160 Hb_001322_160 Hb_001780_030--Hb_001322_160 Hb_008725_070 Hb_008725_070 Hb_001780_030--Hb_008725_070 Hb_000077_110 Hb_000077_110 Hb_001780_030--Hb_000077_110 Hb_023278_030 Hb_023278_030 Hb_127416_010--Hb_023278_030 Hb_127416_010--Hb_183086_070 Hb_000002_350 Hb_000002_350 Hb_127416_010--Hb_000002_350 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_127416_010--Hb_007044_220 Hb_002284_080 Hb_002284_080 Hb_183086_070--Hb_002284_080 Hb_003710_020 Hb_003710_020 Hb_183086_070--Hb_003710_020 Hb_183086_070--Hb_007044_220 Hb_080477_080 Hb_080477_080 Hb_183086_070--Hb_080477_080 Hb_010672_050 Hb_010672_050 Hb_005333_080--Hb_010672_050 Hb_005333_080--Hb_012760_090 Hb_158092_040 Hb_158092_040 Hb_005333_080--Hb_158092_040 Hb_008695_150 Hb_008695_150 Hb_005333_080--Hb_008695_150 Hb_000116_240 Hb_000116_240 Hb_005333_080--Hb_000116_240 Hb_001019_160 Hb_001019_160 Hb_005333_080--Hb_001019_160 Hb_013726_010 Hb_013726_010 Hb_000032_250--Hb_013726_010 Hb_004545_070 Hb_004545_070 Hb_000032_250--Hb_004545_070 Hb_001675_170 Hb_001675_170 Hb_000032_250--Hb_001675_170 Hb_000165_200 Hb_000165_200 Hb_000032_250--Hb_000165_200 Hb_028872_160 Hb_028872_160 Hb_000032_250--Hb_028872_160 Hb_003875_040 Hb_003875_040 Hb_007044_220--Hb_003875_040 Hb_005839_030 Hb_005839_030 Hb_007044_220--Hb_005839_030 Hb_002592_050 Hb_002592_050 Hb_007044_220--Hb_002592_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50338 6.06293 28.6929 44.8703 0.702731 0.837151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38318 0.858558 6.5904 19.0132 7.53849

CAGE analysis