Hb_028872_160

Information

Type -
Description -
Location Contig28872: 108098-115203
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06660g
description POPTRDRAFT_886009; ATP-dependent DNA helicase family protein
nr
ID XP_012085621.1
description PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
swissprot
ID Q0WVW7
description ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2
trembl
ID B9HTB0
description ATP-dependent DNA helicase family protein OS=Populus trichocarpa GN=POPTR_0010s06660g PE=4 SV=2
Gene Ontology
ID GO:0003676
description atp-dependent dna helicase q-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30130: 109476-111315 , PASA_asmbl_30131: 112761-113424 , PASA_asmbl_30133: 116076-116827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_160 0.0 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
2 Hb_004032_210 0.1487820061 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007002_040 0.1544644871 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
4 Hb_000307_220 0.1614430571 - - oxidoreductase family protein [Populus trichocarpa]
5 Hb_000032_250 0.1640230084 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
6 Hb_011214_110 0.1664864057 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_002518_090 0.1701952318 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_004297_090 0.1703989125 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
9 Hb_001616_070 0.1709522346 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
10 Hb_000406_030 0.1746834099 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
11 Hb_003683_130 0.1785780452 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
12 Hb_000237_020 0.1787792181 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
13 Hb_000365_200 0.1796097169 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
14 Hb_000678_010 0.1808873955 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
15 Hb_000907_150 0.1850030854 - - hypothetical protein L484_004295 [Morus notabilis]
16 Hb_001677_100 0.1860943311 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
17 Hb_004223_140 0.1869018003 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_124677_030 0.1882848544 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
19 Hb_001232_090 0.189857718 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
20 Hb_000331_350 0.1906871906 - - hypothetical protein JCGZ_11337 [Jatropha curcas]

Gene co-expression network

sample Hb_028872_160 Hb_028872_160 Hb_004032_210 Hb_004032_210 Hb_028872_160--Hb_004032_210 Hb_007002_040 Hb_007002_040 Hb_028872_160--Hb_007002_040 Hb_000307_220 Hb_000307_220 Hb_028872_160--Hb_000307_220 Hb_000032_250 Hb_000032_250 Hb_028872_160--Hb_000032_250 Hb_011214_110 Hb_011214_110 Hb_028872_160--Hb_011214_110 Hb_002518_090 Hb_002518_090 Hb_028872_160--Hb_002518_090 Hb_003929_180 Hb_003929_180 Hb_004032_210--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_004032_210--Hb_004223_140 Hb_001545_130 Hb_001545_130 Hb_004032_210--Hb_001545_130 Hb_006351_020 Hb_006351_020 Hb_004032_210--Hb_006351_020 Hb_000003_030 Hb_000003_030 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060 Hb_010172_110 Hb_010172_110 Hb_007002_040--Hb_010172_110 Hb_000189_170 Hb_000189_170 Hb_007002_040--Hb_000189_170 Hb_000331_350 Hb_000331_350 Hb_007002_040--Hb_000331_350 Hb_000086_670 Hb_000086_670 Hb_007002_040--Hb_000086_670 Hb_124677_030 Hb_124677_030 Hb_007002_040--Hb_124677_030 Hb_000077_110 Hb_000077_110 Hb_000307_220--Hb_000077_110 Hb_000237_020 Hb_000237_020 Hb_000307_220--Hb_000237_020 Hb_000566_130 Hb_000566_130 Hb_000307_220--Hb_000566_130 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000581_030 Hb_000581_030 Hb_000307_220--Hb_000581_030 Hb_000307_220--Hb_002518_090 Hb_013726_010 Hb_013726_010 Hb_000032_250--Hb_013726_010 Hb_000028_490 Hb_000028_490 Hb_000032_250--Hb_000028_490 Hb_004545_070 Hb_004545_070 Hb_000032_250--Hb_004545_070 Hb_001675_170 Hb_001675_170 Hb_000032_250--Hb_001675_170 Hb_000165_200 Hb_000165_200 Hb_000032_250--Hb_000165_200 Hb_002284_100 Hb_002284_100 Hb_011214_110--Hb_002284_100 Hb_011214_110--Hb_004223_140 Hb_001677_100 Hb_001677_100 Hb_011214_110--Hb_001677_100 Hb_011214_110--Hb_003929_180 Hb_011214_110--Hb_019654_060 Hb_011214_110--Hb_004032_210 Hb_002518_090--Hb_172706_020 Hb_000940_210 Hb_000940_210 Hb_002518_090--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_000309_030 Hb_000309_030 Hb_002518_090--Hb_000309_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0507946 0.045884 0.847446 0.807718 0.0934546 0.125336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0924777 0.109158 0.162248 0.755516 0.258499

CAGE analysis