Hb_000189_170

Information

Type -
Description -
Location Contig189: 167695-170232
Sequence    

Annotation

kegg
ID rcu:RCOM_0484680
description calcium ion binding protein, putative
nr
ID XP_002531299.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZ80
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0484680 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18658: 167790-174092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_170 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_010172_110 0.1265814954 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_003055_110 0.137135242 - - conserved hypothetical protein [Ricinus communis]
4 Hb_083940_010 0.1448113927 - - Zeamatin precursor, putative [Ricinus communis]
5 Hb_007002_040 0.1507104127 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
6 Hb_114310_100 0.1524105339 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
7 Hb_001221_330 0.1558835525 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
8 Hb_000594_070 0.1684547695 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_001817_100 0.1695171004 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
10 Hb_001545_070 0.1758600265 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000406_030 0.1796147924 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
12 Hb_006445_020 0.1798523143 - - hypothetical protein L484_026741 [Morus notabilis]
13 Hb_001329_070 0.1820362139 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
14 Hb_000368_030 0.1821840412 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
15 Hb_006889_020 0.186385086 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
16 Hb_000331_350 0.1869734124 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
17 Hb_005181_160 0.1890120259 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
18 Hb_002534_130 0.1899856587 - - membrane associated ring finger 1,8, putative [Ricinus communis]
19 Hb_000270_180 0.191708324 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
20 Hb_068194_010 0.1933252544 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]

Gene co-expression network

sample Hb_000189_170 Hb_000189_170 Hb_010172_110 Hb_010172_110 Hb_000189_170--Hb_010172_110 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_000331_350 Hb_000331_350 Hb_010172_110--Hb_000331_350 Hb_010172_110--Hb_007002_040 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_000310_120 Hb_000310_120 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070 Hb_000594_070 Hb_000594_070 Hb_003055_110--Hb_000594_070 Hb_003055_110--Hb_010172_110 Hb_068194_010 Hb_068194_010 Hb_003055_110--Hb_068194_010 Hb_001437_280 Hb_001437_280 Hb_003055_110--Hb_001437_280 Hb_003055_110--Hb_114310_100 Hb_001147_050 Hb_001147_050 Hb_083940_010--Hb_001147_050 Hb_000193_260 Hb_000193_260 Hb_083940_010--Hb_000193_260 Hb_002534_130 Hb_002534_130 Hb_083940_010--Hb_002534_130 Hb_005214_170 Hb_005214_170 Hb_083940_010--Hb_005214_170 Hb_083940_010--Hb_001221_330 Hb_007002_040--Hb_000331_350 Hb_000086_670 Hb_000086_670 Hb_007002_040--Hb_000086_670 Hb_028872_160 Hb_028872_160 Hb_007002_040--Hb_028872_160 Hb_124677_030 Hb_124677_030 Hb_007002_040--Hb_124677_030 Hb_000935_080 Hb_000935_080 Hb_114310_100--Hb_000935_080 Hb_000406_030 Hb_000406_030 Hb_114310_100--Hb_000406_030 Hb_000317_270 Hb_000317_270 Hb_114310_100--Hb_000317_270 Hb_000941_060 Hb_000941_060 Hb_114310_100--Hb_000941_060 Hb_004052_100 Hb_004052_100 Hb_114310_100--Hb_004052_100 Hb_005181_160 Hb_005181_160 Hb_001221_330--Hb_005181_160 Hb_022250_020 Hb_022250_020 Hb_001221_330--Hb_022250_020 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36345 3.49022 31.1423 16.3623 0.368153 0.808073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66087 7.82681 15.3708 15.4003 9.72573

CAGE analysis