Hb_005181_160

Information

Type -
Description -
Location Contig5181: 74635-79910
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15440g
description POPTRDRAFT_659077; hypothetical protein
nr
ID XP_012084087.1
description PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19002 PE=4 SV=1
Gene Ontology
ID GO:0006261
description nucleic acid-binding proteins superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46575: 74906-76377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_160 0.0 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
2 Hb_000025_370 0.131418111 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
3 Hb_001221_330 0.1315035153 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
4 Hb_007741_130 0.1319780767 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
5 Hb_004005_020 0.1420922418 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_000368_030 0.1428196369 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
7 Hb_002249_070 0.1428545556 - - gcn4-complementing protein, putative [Ricinus communis]
8 Hb_002909_020 0.1470197743 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
9 Hb_004984_030 0.1500804838 - - protein with unknown function [Ricinus communis]
10 Hb_007850_030 0.1509300964 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
11 Hb_000832_190 0.1537355646 - - Rab3 [Hevea brasiliensis]
12 Hb_002374_080 0.1542705427 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
13 Hb_053709_050 0.1552860497 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_004994_210 0.1561591276 - - phosphomannomutase family protein [Populus trichocarpa]
15 Hb_083940_010 0.1564154788 - - Zeamatin precursor, putative [Ricinus communis]
16 Hb_002693_030 0.1567155584 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
17 Hb_000057_140 0.1567678618 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
18 Hb_001633_090 0.1572570166 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_000270_180 0.1620999547 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
20 Hb_001804_090 0.163449904 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005181_160 Hb_005181_160 Hb_000025_370 Hb_000025_370 Hb_005181_160--Hb_000025_370 Hb_001221_330 Hb_001221_330 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_002249_070 Hb_002249_070 Hb_005181_160--Hb_002249_070 Hb_002028_090 Hb_002028_090 Hb_000025_370--Hb_002028_090 Hb_002671_090 Hb_002671_090 Hb_000025_370--Hb_002671_090 Hb_118282_010 Hb_118282_010 Hb_000025_370--Hb_118282_010 Hb_011053_010 Hb_011053_010 Hb_000025_370--Hb_011053_010 Hb_004984_030 Hb_004984_030 Hb_000025_370--Hb_004984_030 Hb_083940_010 Hb_083940_010 Hb_001221_330--Hb_083940_010 Hb_022250_020 Hb_022250_020 Hb_001221_330--Hb_022250_020 Hb_000189_170 Hb_000189_170 Hb_001221_330--Hb_000189_170 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110 Hb_001191_080 Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_001863_160 Hb_001863_160 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_006538_090 Hb_006538_090 Hb_004005_020--Hb_006538_090 Hb_000723_230 Hb_000723_230 Hb_004005_020--Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_004005_020--Hb_006637_030 Hb_168893_020 Hb_168893_020 Hb_004005_020--Hb_168893_020 Hb_001016_100 Hb_001016_100 Hb_004005_020--Hb_001016_100 Hb_000853_150 Hb_000853_150 Hb_004005_020--Hb_000853_150 Hb_000270_180 Hb_000270_180 Hb_000368_030--Hb_000270_180 Hb_000368_030--Hb_001221_330 Hb_001946_220 Hb_001946_220 Hb_000368_030--Hb_001946_220 Hb_007919_020 Hb_007919_020 Hb_000368_030--Hb_007919_020 Hb_000368_030--Hb_002249_070 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_002249_070--Hb_000270_180 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_000382_020 Hb_000382_020 Hb_002249_070--Hb_000382_020 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120092 0.264959 1.0667 0.637926 0.0683579 0.125663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.402657 0.633646 0.534156 0.434126 0.148826

CAGE analysis