Hb_022250_020

Information

Type -
Description -
Location Contig22250: 27776-29381
Sequence    

Annotation

kegg
ID rcu:RCOM_1503210
description electron transporter, putative
nr
ID XP_012090566.1
description PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
swissprot
ID P24297
description Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rub PE=1 SV=2
trembl
ID E6NU05
description JHL07K02.5 protein OS=Jatropha curcas GN=JHL07K02.5 PE=4 SV=1
Gene Ontology
ID GO:0005506
description rubredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_020 0.0 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
2 Hb_001221_330 0.1548177308 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
3 Hb_001545_070 0.1786442497 - - conserved hypothetical protein [Ricinus communis]
4 Hb_083940_010 0.1832173641 - - Zeamatin precursor, putative [Ricinus communis]
5 Hb_000189_170 0.1941825521 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_006153_040 0.1946373379 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
7 Hb_000487_120 0.195345958 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002783_110 0.1966956081 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_002217_100 0.2012108068 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
10 Hb_011609_090 0.2038458568 - - protein with unknown function [Ricinus communis]
11 Hb_002045_060 0.2053260896 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_001147_050 0.2097661828 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
13 Hb_000215_280 0.210593869 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
14 Hb_004123_020 0.2119857514 - - amino acid binding protein, putative [Ricinus communis]
15 Hb_002774_110 0.2141411678 - - heat shock protein binding protein, putative [Ricinus communis]
16 Hb_000008_400 0.214645389 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
17 Hb_008760_010 0.214870239 - - berberine bridge enzyme [Hevea brasiliensis]
18 Hb_004931_110 0.2161332005 - - inorganic phosphate transporter, putative [Ricinus communis]
19 Hb_001016_100 0.2209865759 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
20 Hb_003055_110 0.2211233293 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_022250_020 Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_022250_020--Hb_001221_330 Hb_001545_070 Hb_001545_070 Hb_022250_020--Hb_001545_070 Hb_083940_010 Hb_083940_010 Hb_022250_020--Hb_083940_010 Hb_000189_170 Hb_000189_170 Hb_022250_020--Hb_000189_170 Hb_006153_040 Hb_006153_040 Hb_022250_020--Hb_006153_040 Hb_000487_120 Hb_000487_120 Hb_022250_020--Hb_000487_120 Hb_005181_160 Hb_005181_160 Hb_001221_330--Hb_005181_160 Hb_001221_330--Hb_083940_010 Hb_001221_330--Hb_000189_170 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110 Hb_007943_060 Hb_007943_060 Hb_001545_070--Hb_007943_060 Hb_001545_070--Hb_000189_170 Hb_001545_070--Hb_001221_330 Hb_001545_070--Hb_000487_120 Hb_009707_030 Hb_009707_030 Hb_001545_070--Hb_009707_030 Hb_001147_050 Hb_001147_050 Hb_083940_010--Hb_001147_050 Hb_000193_260 Hb_000193_260 Hb_083940_010--Hb_000193_260 Hb_083940_010--Hb_000189_170 Hb_002534_130 Hb_002534_130 Hb_083940_010--Hb_002534_130 Hb_005214_170 Hb_005214_170 Hb_083940_010--Hb_005214_170 Hb_010172_110 Hb_010172_110 Hb_000189_170--Hb_010172_110 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_002045_060 Hb_002045_060 Hb_006153_040--Hb_002045_060 Hb_000260_620 Hb_000260_620 Hb_006153_040--Hb_000260_620 Hb_001059_150 Hb_001059_150 Hb_006153_040--Hb_001059_150 Hb_001114_080 Hb_001114_080 Hb_006153_040--Hb_001114_080 Hb_000771_060 Hb_000771_060 Hb_006153_040--Hb_000771_060 Hb_001153_120 Hb_001153_120 Hb_006153_040--Hb_001153_120 Hb_000487_120--Hb_001221_330 Hb_000487_120--Hb_005181_160 Hb_002374_080 Hb_002374_080 Hb_000487_120--Hb_002374_080 Hb_000487_120--Hb_001114_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106332 0.115315 0.838079 0.375114 0.0918327 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150443 0.532257 0.849084 0.576223 0.3531

CAGE analysis