Hb_002374_080

Information

Type -
Description -
Location Contig2374: 79256-82549
Sequence    

Annotation

kegg
ID tcc:TCM_035189
description Plastidic type i signal peptidase 1 isoform 1
nr
ID XP_012078269.1
description PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
swissprot
ID Q8H0W1
description Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2
trembl
ID A0A061FPC9
description Plastidic type i signal peptidase 1 isoform 1 OS=Theobroma cacao GN=TCM_035189 PE=3 SV=1
Gene Ontology
ID GO:0016020
description chloroplast processing peptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24845: 79062-82534 , PASA_asmbl_24846: 79558-80382 , PASA_asmbl_24847: 79855-80736 , PASA_asmbl_24848: 80165-80419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_080 0.0 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
2 Hb_006671_010 0.0847818712 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
3 Hb_005054_210 0.1018457048 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
4 Hb_000676_390 0.102739902 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
5 Hb_003362_030 0.1032848156 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
6 Hb_000803_200 0.1045204095 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
7 Hb_000920_200 0.1051488348 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
8 Hb_002228_070 0.1052508971 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
9 Hb_000413_280 0.1068582063 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
10 Hb_148121_040 0.107025641 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
11 Hb_026889_030 0.1074983939 - - protein with unknown function [Ricinus communis]
12 Hb_000302_140 0.1082537126 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
13 Hb_000258_250 0.1083583261 - - Origin recognition complex subunit, putative [Ricinus communis]
14 Hb_006326_040 0.1093855893 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002681_200 0.1106788023 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
16 Hb_020025_040 0.1109005575 - - sodium-bile acid cotransporter, putative [Ricinus communis]
17 Hb_000402_160 0.1112537083 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
18 Hb_003622_040 0.1138018698 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
19 Hb_007425_010 0.1139843737 - - uncharacterized protein LOC100499741 [Glycine max]
20 Hb_055062_020 0.1147589213 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_002374_080 Hb_002374_080 Hb_006671_010 Hb_006671_010 Hb_002374_080--Hb_006671_010 Hb_005054_210 Hb_005054_210 Hb_002374_080--Hb_005054_210 Hb_000676_390 Hb_000676_390 Hb_002374_080--Hb_000676_390 Hb_003362_030 Hb_003362_030 Hb_002374_080--Hb_003362_030 Hb_000803_200 Hb_000803_200 Hb_002374_080--Hb_000803_200 Hb_000920_200 Hb_000920_200 Hb_002374_080--Hb_000920_200 Hb_000175_340 Hb_000175_340 Hb_006671_010--Hb_000175_340 Hb_006671_010--Hb_000676_390 Hb_000258_250 Hb_000258_250 Hb_006671_010--Hb_000258_250 Hb_011609_020 Hb_011609_020 Hb_006671_010--Hb_011609_020 Hb_026889_030 Hb_026889_030 Hb_006671_010--Hb_026889_030 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_000457_180 Hb_000457_180 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_003362_030--Hb_011609_020 Hb_003362_030--Hb_148121_040 Hb_003362_030--Hb_008071_020 Hb_021068_040 Hb_021068_040 Hb_003362_030--Hb_021068_040 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_055062_020 Hb_055062_020 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000803_200--Hb_000045_310 Hb_001218_030 Hb_001218_030 Hb_000920_200--Hb_001218_030 Hb_002119_130 Hb_002119_130 Hb_000920_200--Hb_002119_130 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27165 3.45481 15.0745 11.6933 4.92375 4.65189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2909 16.945 15.1918 8.58189 4.89986

CAGE analysis