Hb_000258_250

Information

Type -
Description -
Location Contig258: 203569-206494
Sequence    

Annotation

kegg
ID rcu:RCOM_0836080
description Origin recognition complex subunit, putative
nr
ID XP_002522422.1
description Origin recognition complex subunit, putative [Ricinus communis]
swissprot
ID Q9ZVH3
description Origin of replication complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=2
trembl
ID B9S8V3
description Origin recognition complex subunit, putative OS=Ricinus communis GN=RCOM_0836080 PE=4 SV=1
Gene Ontology
ID GO:0005664
description origin recognition complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26825: 203889-205819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_250 0.0 - - Origin recognition complex subunit, putative [Ricinus communis]
2 Hb_000189_240 0.0875299097 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
3 Hb_000731_190 0.0921448171 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
4 Hb_000356_090 0.0927233096 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
5 Hb_011609_020 0.0948980373 - - conserved hypothetical protein [Ricinus communis]
6 Hb_055062_020 0.1000224885 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
7 Hb_000302_140 0.1025447161 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
8 Hb_001141_140 0.1036045807 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_000571_020 0.1038868447 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
10 Hb_005391_030 0.1047250446 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
11 Hb_000261_140 0.1055097512 - - -
12 Hb_001512_080 0.1055829745 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
13 Hb_000453_120 0.1062848496 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
14 Hb_026053_020 0.1075206005 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
15 Hb_002374_080 0.1083583261 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
16 Hb_091433_020 0.1085983571 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
17 Hb_000676_390 0.1086380978 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
18 Hb_001718_030 0.1101479873 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
19 Hb_001053_140 0.1102128488 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
20 Hb_001484_070 0.1106398146 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000258_250 Hb_000258_250 Hb_000189_240 Hb_000189_240 Hb_000258_250--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000258_250--Hb_000731_190 Hb_000356_090 Hb_000356_090 Hb_000258_250--Hb_000356_090 Hb_011609_020 Hb_011609_020 Hb_000258_250--Hb_011609_020 Hb_055062_020 Hb_055062_020 Hb_000258_250--Hb_055062_020 Hb_000302_140 Hb_000302_140 Hb_000258_250--Hb_000302_140 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_000087_130 Hb_000087_130 Hb_000356_090--Hb_000087_130 Hb_005391_030 Hb_005391_030 Hb_000356_090--Hb_005391_030 Hb_006915_040 Hb_006915_040 Hb_000356_090--Hb_006915_040 Hb_000356_090--Hb_000189_240 Hb_000317_070 Hb_000317_070 Hb_000356_090--Hb_000317_070 Hb_011609_020--Hb_000189_240 Hb_010175_040 Hb_010175_040 Hb_011609_020--Hb_010175_040 Hb_003362_030 Hb_003362_030 Hb_011609_020--Hb_003362_030 Hb_006831_120 Hb_006831_120 Hb_011609_020--Hb_006831_120 Hb_004052_050 Hb_004052_050 Hb_011609_020--Hb_004052_050 Hb_011609_020--Hb_000302_140 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_000403_060 Hb_000403_060 Hb_055062_020--Hb_000403_060 Hb_003849_130 Hb_003849_130 Hb_055062_020--Hb_003849_130 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15405 0.483876 2.49181 2.12856 1.07406 1.01759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58366 5.44333 3.1543 1.77729 0.746235

CAGE analysis