Hb_000356_090

Information

Type -
Description -
Location Contig356: 155444-161661
Sequence    

Annotation

kegg
ID rcu:RCOM_1540540
description AMME syndrome candidateprotein 1 protein, putative
nr
ID XP_012065742.1
description PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
swissprot
ID Q9ZVJ2
description Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1
trembl
ID A0A067L4P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26477 PE=4 SV=1
Gene Ontology
ID GO:0005829
description amme syndrome candidateprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000356_090 0.0 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
2 Hb_000087_130 0.0808741872 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
3 Hb_005391_030 0.0854389822 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
4 Hb_006915_040 0.087704367 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
5 Hb_000189_240 0.088305148 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
6 Hb_000258_250 0.0927233096 - - Origin recognition complex subunit, putative [Ricinus communis]
7 Hb_000317_070 0.0947348053 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
8 Hb_011609_020 0.0976483081 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010560_030 0.0976807161 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
10 Hb_000450_130 0.0980558656 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
11 Hb_091433_020 0.0993074253 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
12 Hb_153544_010 0.1000937306 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
13 Hb_001726_040 0.103321716 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
14 Hb_000417_360 0.1056503423 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
15 Hb_000735_040 0.1069461882 - - 60S ribosomal protein L32A [Hevea brasiliensis]
16 Hb_010175_040 0.1070682803 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
17 Hb_143766_010 0.1081506907 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
18 Hb_004162_210 0.1082152141 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
19 Hb_007441_260 0.108461411 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
20 Hb_002838_030 0.1090204139 - - 40S ribosomal protein S25A [Hevea brasiliensis]

Gene co-expression network

sample Hb_000356_090 Hb_000356_090 Hb_000087_130 Hb_000087_130 Hb_000356_090--Hb_000087_130 Hb_005391_030 Hb_005391_030 Hb_000356_090--Hb_005391_030 Hb_006915_040 Hb_006915_040 Hb_000356_090--Hb_006915_040 Hb_000189_240 Hb_000189_240 Hb_000356_090--Hb_000189_240 Hb_000258_250 Hb_000258_250 Hb_000356_090--Hb_000258_250 Hb_000317_070 Hb_000317_070 Hb_000356_090--Hb_000317_070 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_000193_120 Hb_000193_120 Hb_005391_030--Hb_000193_120 Hb_000103_010 Hb_000103_010 Hb_005391_030--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_005391_030--Hb_001085_270 Hb_180074_010 Hb_180074_010 Hb_005391_030--Hb_180074_010 Hb_007441_260 Hb_007441_260 Hb_005391_030--Hb_007441_260 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_179296_010 Hb_179296_010 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010 Hb_003376_190 Hb_003376_190 Hb_006915_040--Hb_003376_190 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_000258_250--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000258_250--Hb_000731_190 Hb_011609_020 Hb_011609_020 Hb_000258_250--Hb_011609_020 Hb_055062_020 Hb_055062_020 Hb_000258_250--Hb_055062_020 Hb_000302_140 Hb_000302_140 Hb_000258_250--Hb_000302_140 Hb_004871_020 Hb_004871_020 Hb_000317_070--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_000317_070--Hb_007441_300 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1769 8.30916 22.5387 30.5939 8.95254 10.8768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.884 69.69 32.6427 22.4547 6.44224

CAGE analysis