Hb_006671_010

Information

Type -
Description -
Location Contig6671: 3545-6062
Sequence    

Annotation

kegg
ID rcu:RCOM_0507600
description DNA cross-link repair protein pso2/snm1, putative
nr
ID XP_012083903.1
description PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
swissprot
ID D2H8V8
description 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3 SV=1
trembl
ID B9S9Q1
description DNA cross-link repair protein pso2/snm1, putative OS=Ricinus communis GN=RCOM_0507600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53288: 3518-5833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006671_010 0.0 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
2 Hb_002374_080 0.0847818712 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
3 Hb_000175_340 0.1091637992 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
4 Hb_000676_390 0.1110727593 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
5 Hb_000258_250 0.1110842237 - - Origin recognition complex subunit, putative [Ricinus communis]
6 Hb_011609_020 0.1112106234 - - conserved hypothetical protein [Ricinus communis]
7 Hb_026889_030 0.1141489579 - - protein with unknown function [Ricinus communis]
8 Hb_007425_010 0.1201300069 - - uncharacterized protein LOC100499741 [Glycine max]
9 Hb_055062_020 0.1201328201 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
10 Hb_003362_030 0.1262335657 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
11 Hb_000402_160 0.1281362257 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
12 Hb_001188_030 0.1294645874 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
13 Hb_001493_050 0.1310380022 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
14 Hb_004884_160 0.1339288066 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
15 Hb_148121_040 0.1355056144 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_000302_140 0.1370829529 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
17 Hb_007044_120 0.1383930757 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
18 Hb_002228_070 0.1387417322 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
19 Hb_004157_040 0.1387500805 - - Rab2 [Hevea brasiliensis]
20 Hb_048476_100 0.1414863116 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]

Gene co-expression network

sample Hb_006671_010 Hb_006671_010 Hb_002374_080 Hb_002374_080 Hb_006671_010--Hb_002374_080 Hb_000175_340 Hb_000175_340 Hb_006671_010--Hb_000175_340 Hb_000676_390 Hb_000676_390 Hb_006671_010--Hb_000676_390 Hb_000258_250 Hb_000258_250 Hb_006671_010--Hb_000258_250 Hb_011609_020 Hb_011609_020 Hb_006671_010--Hb_011609_020 Hb_026889_030 Hb_026889_030 Hb_006671_010--Hb_026889_030 Hb_005054_210 Hb_005054_210 Hb_002374_080--Hb_005054_210 Hb_002374_080--Hb_000676_390 Hb_003362_030 Hb_003362_030 Hb_002374_080--Hb_003362_030 Hb_000803_200 Hb_000803_200 Hb_002374_080--Hb_000803_200 Hb_000920_200 Hb_000920_200 Hb_002374_080--Hb_000920_200 Hb_000403_060 Hb_000403_060 Hb_000175_340--Hb_000403_060 Hb_003813_030 Hb_003813_030 Hb_000175_340--Hb_003813_030 Hb_050514_010 Hb_050514_010 Hb_000175_340--Hb_050514_010 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_007044_120 Hb_007044_120 Hb_000175_340--Hb_007044_120 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_000189_240 Hb_000189_240 Hb_000258_250--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000258_250--Hb_000731_190 Hb_000356_090 Hb_000356_090 Hb_000258_250--Hb_000356_090 Hb_000258_250--Hb_011609_020 Hb_055062_020 Hb_055062_020 Hb_000258_250--Hb_055062_020 Hb_000302_140 Hb_000302_140 Hb_000258_250--Hb_000302_140 Hb_011609_020--Hb_000189_240 Hb_010175_040 Hb_010175_040 Hb_011609_020--Hb_010175_040 Hb_011609_020--Hb_003362_030 Hb_006831_120 Hb_006831_120 Hb_011609_020--Hb_006831_120 Hb_004052_050 Hb_004052_050 Hb_011609_020--Hb_004052_050 Hb_011609_020--Hb_000302_140 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_026889_030--Hb_004889_020 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32023 0.275701 1.46568 0.914721 0.702543 0.312814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01884 1.79092 1.46061 0.494537 0.381644

CAGE analysis