Hb_000487_120

Information

Type -
Description -
Location Contig487: 134138-139295
Sequence    

Annotation

kegg
ID rcu:RCOM_1575590
description hypothetical protein
nr
ID XP_002513393.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93W28
description Uncharacterized protein At4g15545 OS=Arabidopsis thaliana GN=At4g15545 PE=1 SV=1
trembl
ID B9RI24
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1575590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45000: 136257-137663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001221_330 0.1665745915 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
3 Hb_001545_070 0.1921578813 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005181_160 0.1931553838 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
5 Hb_022250_020 0.195345958 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
6 Hb_002374_080 0.1984895973 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
7 Hb_001114_080 0.1986347234 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
8 Hb_000008_400 0.202518263 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
9 Hb_189216_030 0.2059734807 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
10 Hb_004125_050 0.2108793128 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
11 Hb_000368_030 0.2127461685 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
12 Hb_000200_200 0.2134955355 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
13 Hb_000130_110 0.2171981956 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
14 Hb_002783_110 0.2203604935 - - Zeamatin precursor, putative [Ricinus communis]
15 Hb_006671_010 0.221224481 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
16 Hb_007943_060 0.2228445728 - - Rop5 [Hevea brasiliensis]
17 Hb_000340_500 0.2228477284 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
18 Hb_000008_380 0.2235282988 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000189_170 0.2242015452 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_048476_100 0.2246441331 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]

Gene co-expression network

sample Hb_000487_120 Hb_000487_120 Hb_001221_330 Hb_001221_330 Hb_000487_120--Hb_001221_330 Hb_001545_070 Hb_001545_070 Hb_000487_120--Hb_001545_070 Hb_005181_160 Hb_005181_160 Hb_000487_120--Hb_005181_160 Hb_022250_020 Hb_022250_020 Hb_000487_120--Hb_022250_020 Hb_002374_080 Hb_002374_080 Hb_000487_120--Hb_002374_080 Hb_001114_080 Hb_001114_080 Hb_000487_120--Hb_001114_080 Hb_001221_330--Hb_005181_160 Hb_083940_010 Hb_083940_010 Hb_001221_330--Hb_083940_010 Hb_001221_330--Hb_022250_020 Hb_000189_170 Hb_000189_170 Hb_001221_330--Hb_000189_170 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110 Hb_007943_060 Hb_007943_060 Hb_001545_070--Hb_007943_060 Hb_001545_070--Hb_000189_170 Hb_001545_070--Hb_022250_020 Hb_001545_070--Hb_001221_330 Hb_009707_030 Hb_009707_030 Hb_001545_070--Hb_009707_030 Hb_000025_370 Hb_000025_370 Hb_005181_160--Hb_000025_370 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_002249_070 Hb_002249_070 Hb_005181_160--Hb_002249_070 Hb_022250_020--Hb_083940_010 Hb_022250_020--Hb_000189_170 Hb_006153_040 Hb_006153_040 Hb_022250_020--Hb_006153_040 Hb_006671_010 Hb_006671_010 Hb_002374_080--Hb_006671_010 Hb_005054_210 Hb_005054_210 Hb_002374_080--Hb_005054_210 Hb_000676_390 Hb_000676_390 Hb_002374_080--Hb_000676_390 Hb_003362_030 Hb_003362_030 Hb_002374_080--Hb_003362_030 Hb_000803_200 Hb_000803_200 Hb_002374_080--Hb_000803_200 Hb_000920_200 Hb_000920_200 Hb_002374_080--Hb_000920_200 Hb_000796_010 Hb_000796_010 Hb_001114_080--Hb_000796_010 Hb_024074_010 Hb_024074_010 Hb_001114_080--Hb_024074_010 Hb_000742_280 Hb_000742_280 Hb_001114_080--Hb_000742_280 Hb_000331_430 Hb_000331_430 Hb_001114_080--Hb_000331_430 Hb_007894_050 Hb_007894_050 Hb_001114_080--Hb_007894_050 Hb_066720_010 Hb_066720_010 Hb_001114_080--Hb_066720_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204173 0.0215466 1.67284 0.963194 0.102135 0.113554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.63967 1.23842 1.71224 0.855499 0.237915

CAGE analysis