Hb_066720_010

Information

Type -
Description -
Location Contig66720: 1094-1528
Sequence    

Annotation

kegg
ID pmum:103326263
description probable histone H2B.1
nr
ID XP_012064675.1
description PREDICTED: histone H2B [Jatropha curcas]
swissprot
ID O49118
description Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3
trembl
ID A0A067LH84
description Histone H2B OS=Jatropha curcas GN=JCGZ_05422 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53289: 1019-1701
cDNA
(Sanger)
(ID:Location)		 004_G06.ab1: 1019-1673 , 035_L24.ab1: 1019-1673 , 049_M11.ab1: 1066-1617

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066720_010 0.0 - - PREDICTED: histone H2B [Jatropha curcas]
2 Hb_000302_140 0.114771988 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
3 Hb_002228_070 0.1174081919 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
4 Hb_006538_090 0.1239738276 - - PREDICTED: IST1 homolog [Jatropha curcas]
5 Hb_000174_210 0.1253139609 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
6 Hb_004994_210 0.1304698597 - - phosphomannomutase family protein [Populus trichocarpa]
7 Hb_000402_160 0.1307229692 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
8 Hb_001114_080 0.1337046883 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
9 Hb_001019_100 0.1348184025 - - BnaC02g13240D [Brassica napus]
10 Hb_000796_010 0.1367623389 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
11 Hb_007894_170 0.1393797211 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
12 Hb_003622_040 0.1396320686 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
13 Hb_000076_220 0.1406756156 - - thioredoxin domain-containing protein, putative [Ricinus communis]
14 Hb_002027_390 0.1411926611 - - shikimate dehydrogenase, putative [Ricinus communis]
15 Hb_000920_200 0.1416784973 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
16 Hb_007425_010 0.1418632853 - - uncharacterized protein LOC100499741 [Glycine max]
17 Hb_000665_140 0.1454055983 - - PREDICTED: protein MEMO1 [Jatropha curcas]
18 Hb_002374_080 0.1466920664 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
19 Hb_000331_430 0.1466943751 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
20 Hb_003531_070 0.1475293663 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_066720_010 Hb_066720_010 Hb_000302_140 Hb_000302_140 Hb_066720_010--Hb_000302_140 Hb_002228_070 Hb_002228_070 Hb_066720_010--Hb_002228_070 Hb_006538_090 Hb_006538_090 Hb_066720_010--Hb_006538_090 Hb_000174_210 Hb_000174_210 Hb_066720_010--Hb_000174_210 Hb_004994_210 Hb_004994_210 Hb_066720_010--Hb_004994_210 Hb_000402_160 Hb_000402_160 Hb_066720_010--Hb_000402_160 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_002228_070--Hb_000402_160 Hb_020025_040 Hb_020025_040 Hb_002228_070--Hb_020025_040 Hb_002228_070--Hb_000302_140 Hb_001096_090 Hb_001096_090 Hb_002228_070--Hb_001096_090 Hb_002228_070--Hb_001341_150 Hb_010098_050 Hb_010098_050 Hb_002228_070--Hb_010098_050 Hb_168893_020 Hb_168893_020 Hb_006538_090--Hb_168893_020 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_005054_210 Hb_005054_210 Hb_000174_210--Hb_005054_210 Hb_002014_020 Hb_002014_020 Hb_000174_210--Hb_002014_020 Hb_003622_040 Hb_003622_040 Hb_000174_210--Hb_003622_040 Hb_007894_170 Hb_007894_170 Hb_000174_210--Hb_007894_170 Hb_000665_050 Hb_000665_050 Hb_000174_210--Hb_000665_050 Hb_006420_080 Hb_006420_080 Hb_000174_210--Hb_006420_080 Hb_001633_090 Hb_001633_090 Hb_004994_210--Hb_001633_090 Hb_000076_220 Hb_000076_220 Hb_004994_210--Hb_000076_220 Hb_053709_050 Hb_053709_050 Hb_004994_210--Hb_053709_050 Hb_007850_030 Hb_007850_030 Hb_004994_210--Hb_007850_030 Hb_000174_260 Hb_000174_260 Hb_004994_210--Hb_000174_260 Hb_004994_210--Hb_006538_090 Hb_001493_050 Hb_001493_050 Hb_000402_160--Hb_001493_050 Hb_002226_060 Hb_002226_060 Hb_000402_160--Hb_002226_060 Hb_000402_160--Hb_001341_150 Hb_000402_160--Hb_010098_050 Hb_000402_160--Hb_000302_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.776 41.8896 167.145 98.6152 57.5346 14.0536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.104 146.509 102.327 124.195 66.2106

CAGE analysis