Hb_007894_170

Information

Type -
Description -
Location Contig7894: 136539-138976
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44940g
description hypothetical protein
nr
ID XP_012070795.1
description PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
swissprot
ID Q9C6T7
description Protein FATTY ACID EXPORT 5 OS=Arabidopsis thaliana GN=FAX5 PE=3 SV=1
trembl
ID U5GWK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44940g PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0136 membrane protein at2g26240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58280: 136633-138976 , PASA_asmbl_58281: 137727-138247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_170 0.0 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
2 Hb_028396_010 0.0765726598 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
3 Hb_003041_050 0.0802249888 - - -
4 Hb_000538_120 0.084468244 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
5 Hb_000045_310 0.0870466864 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
6 Hb_001301_110 0.0881609425 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
7 Hb_007894_060 0.0882403641 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
8 Hb_007928_030 0.088900786 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
9 Hb_005391_040 0.0926487725 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
10 Hb_024650_070 0.0936108466 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
11 Hb_000069_720 0.0940589725 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
12 Hb_006573_190 0.0960583781 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
13 Hb_001341_150 0.0968075025 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
14 Hb_000174_210 0.0972002122 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
15 Hb_008103_050 0.0982829908 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
16 Hb_003207_180 0.0994510708 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
17 Hb_004044_040 0.0997396444 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
18 Hb_005054_210 0.0999285165 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
19 Hb_006816_260 0.1004156464 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
20 Hb_001218_030 0.1004630868 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_170 Hb_007894_170 Hb_028396_010 Hb_028396_010 Hb_007894_170--Hb_028396_010 Hb_003041_050 Hb_003041_050 Hb_007894_170--Hb_003041_050 Hb_000538_120 Hb_000538_120 Hb_007894_170--Hb_000538_120 Hb_000045_310 Hb_000045_310 Hb_007894_170--Hb_000045_310 Hb_001301_110 Hb_001301_110 Hb_007894_170--Hb_001301_110 Hb_007894_060 Hb_007894_060 Hb_007894_170--Hb_007894_060 Hb_028396_010--Hb_000045_310 Hb_008071_020 Hb_008071_020 Hb_028396_010--Hb_008071_020 Hb_001341_150 Hb_001341_150 Hb_028396_010--Hb_001341_150 Hb_001931_010 Hb_001931_010 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_001279_080 Hb_001279_080 Hb_028396_010--Hb_001279_080 Hb_009787_030 Hb_009787_030 Hb_003041_050--Hb_009787_030 Hb_001427_160 Hb_001427_160 Hb_003041_050--Hb_001427_160 Hb_011344_120 Hb_011344_120 Hb_003041_050--Hb_011344_120 Hb_003041_050--Hb_001301_110 Hb_055320_010 Hb_055320_010 Hb_003041_050--Hb_055320_010 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_000566_120 Hb_000566_120 Hb_000045_310--Hb_000566_120 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_000045_310--Hb_008071_020 Hb_000045_310--Hb_001931_010 Hb_000069_720 Hb_000069_720 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_001301_110--Hb_007894_060 Hb_007894_060--Hb_007928_030 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_007894_060--Hb_000136_260 Hb_007894_060--Hb_000069_720
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4879 14.4896 47.0793 52.3332 22.0068 27.3181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.7494 61.1339 33.0367 47.2379 25.4405

CAGE analysis