Hb_000796_010

Information

Type -
Description -
Location Contig796: 3005-6298
Sequence    

Annotation

kegg
ID pmum:103327282
description nitrogen regulatory protein P-II homolog
nr
ID XP_012082957.1
description PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
swissprot
ID Q9ZST4
description Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana GN=GLB1 PE=1 SV=1
trembl
ID A0A067JZV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14074 PE=3 SV=1
Gene Ontology
ID GO:0005829
description nitrogen regulatory protein p-ii homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58534: 3039-6293 , PASA_asmbl_58535: 3602-3833
cDNA
(Sanger)
(ID:Location)		 031_J18.ab1: 3435-6291 , 032_C05.ab1: 3435-6293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_010 0.0 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
2 Hb_001114_080 0.1184993697 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
3 Hb_001019_100 0.1221358658 - - BnaC02g13240D [Brassica napus]
4 Hb_003126_130 0.1327992004 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
5 Hb_007425_010 0.1364549583 - - uncharacterized protein LOC100499741 [Glycine max]
6 Hb_066720_010 0.1367623389 - - PREDICTED: histone H2B [Jatropha curcas]
7 Hb_001059_160 0.1449302165 - - hexose transporter 1 [Hevea brasiliensis]
8 Hb_000174_210 0.1470873532 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
9 Hb_002374_080 0.1489001351 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
10 Hb_000923_060 0.1516058161 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
11 Hb_002045_060 0.152039039 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_000122_190 0.1529270248 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_007894_050 0.1560661397 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
14 Hb_003411_090 0.1563883908 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_003082_030 0.1565132364 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
16 Hb_002228_070 0.1574640823 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
17 Hb_002909_020 0.1575189967 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
18 Hb_000174_030 0.1577320957 - - hypothetical protein RCOM_1077370 [Ricinus communis]
19 Hb_002234_060 0.1593083016 - - F-box protein, atfbl3, putative [Ricinus communis]
20 Hb_000920_200 0.1594038731 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_010 Hb_000796_010 Hb_001114_080 Hb_001114_080 Hb_000796_010--Hb_001114_080 Hb_001019_100 Hb_001019_100 Hb_000796_010--Hb_001019_100 Hb_003126_130 Hb_003126_130 Hb_000796_010--Hb_003126_130 Hb_007425_010 Hb_007425_010 Hb_000796_010--Hb_007425_010 Hb_066720_010 Hb_066720_010 Hb_000796_010--Hb_066720_010 Hb_001059_160 Hb_001059_160 Hb_000796_010--Hb_001059_160 Hb_024074_010 Hb_024074_010 Hb_001114_080--Hb_024074_010 Hb_000742_280 Hb_000742_280 Hb_001114_080--Hb_000742_280 Hb_000331_430 Hb_000331_430 Hb_001114_080--Hb_000331_430 Hb_007894_050 Hb_007894_050 Hb_001114_080--Hb_007894_050 Hb_001114_080--Hb_066720_010 Hb_003124_150 Hb_003124_150 Hb_001019_100--Hb_003124_150 Hb_003360_040 Hb_003360_040 Hb_001019_100--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_001019_100--Hb_000920_200 Hb_000309_130 Hb_000309_130 Hb_001019_100--Hb_000309_130 Hb_002119_130 Hb_002119_130 Hb_001019_100--Hb_002119_130 Hb_006740_030 Hb_006740_030 Hb_001019_100--Hb_006740_030 Hb_003126_130--Hb_007894_050 Hb_001377_450 Hb_001377_450 Hb_003126_130--Hb_001377_450 Hb_001073_080 Hb_001073_080 Hb_003126_130--Hb_001073_080 Hb_002909_020 Hb_002909_020 Hb_003126_130--Hb_002909_020 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_026889_030 Hb_026889_030 Hb_007425_010--Hb_026889_030 Hb_003622_040 Hb_003622_040 Hb_007425_010--Hb_003622_040 Hb_005054_210 Hb_005054_210 Hb_007425_010--Hb_005054_210 Hb_007425_010--Hb_001019_100 Hb_028872_080 Hb_028872_080 Hb_007425_010--Hb_028872_080 Hb_000457_180 Hb_000457_180 Hb_007425_010--Hb_000457_180 Hb_000302_140 Hb_000302_140 Hb_066720_010--Hb_000302_140 Hb_002228_070 Hb_002228_070 Hb_066720_010--Hb_002228_070 Hb_006538_090 Hb_006538_090 Hb_066720_010--Hb_006538_090 Hb_000174_210 Hb_000174_210 Hb_066720_010--Hb_000174_210 Hb_004994_210 Hb_004994_210 Hb_066720_010--Hb_004994_210 Hb_000402_160 Hb_000402_160 Hb_066720_010--Hb_000402_160 Hb_002234_060 Hb_002234_060 Hb_001059_160--Hb_002234_060 Hb_001059_170 Hb_001059_170 Hb_001059_160--Hb_001059_170 Hb_000258_330 Hb_000258_330 Hb_001059_160--Hb_000258_330 Hb_000331_460 Hb_000331_460 Hb_001059_160--Hb_000331_460 Hb_004225_080 Hb_004225_080 Hb_001059_160--Hb_004225_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.08943 4.5213 27.5311 13.5026 4.24165 3.93999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5684 15.7368 22.9949 10.4805 12.9964

CAGE analysis