Hb_002234_060

Information

Type -
Description -
Location Contig2234: 43684-47405
Sequence    

Annotation

kegg
ID rcu:RCOM_0849630
description F-box protein, atfbl3, putative
nr
ID XP_002526701.1
description F-box protein, atfbl3, putative [Ricinus communis]
swissprot
ID Q8RWU5
description F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1
trembl
ID B9SL32
description F-box protein, atfbl3, putative OS=Ricinus communis GN=RCOM_0849630 PE=4 SV=1
Gene Ontology
ID GO:0009407
description f-box lrr-repeat protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23164: 45135-46436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_060 0.0 - - F-box protein, atfbl3, putative [Ricinus communis]
2 Hb_181729_010 0.1331569473 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
3 Hb_000317_490 0.13841619 - - Gibberellin receptor GID1, putative [Ricinus communis]
4 Hb_002016_170 0.1423712361 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000836_450 0.1460730705 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
6 Hb_000025_210 0.1466314081 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
7 Hb_004225_030 0.1486452876 - - hypothetical protein F383_15788 [Gossypium arboreum]
8 Hb_002284_310 0.1503770345 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
9 Hb_002183_070 0.1525283355 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
10 Hb_171376_010 0.1536193388 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
11 Hb_002871_190 0.1553433612 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
12 Hb_048476_110 0.1563853516 - - PREDICTED: adagio protein 3 [Jatropha curcas]
13 Hb_001059_160 0.1579059233 - - hexose transporter 1 [Hevea brasiliensis]
14 Hb_002374_570 0.1587286084 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_000796_010 0.1593083016 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
16 Hb_004225_080 0.1609445138 - - -
17 Hb_002490_020 0.1612621071 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
18 Hb_050514_010 0.1613077433 - - hypothetical protein 29 [Hevea brasiliensis]
19 Hb_000334_150 0.1614060309 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000000_210 0.1636821031 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_060 Hb_002234_060 Hb_181729_010 Hb_181729_010 Hb_002234_060--Hb_181729_010 Hb_000317_490 Hb_000317_490 Hb_002234_060--Hb_000317_490 Hb_002016_170 Hb_002016_170 Hb_002234_060--Hb_002016_170 Hb_000836_450 Hb_000836_450 Hb_002234_060--Hb_000836_450 Hb_000025_210 Hb_000025_210 Hb_002234_060--Hb_000025_210 Hb_004225_030 Hb_004225_030 Hb_002234_060--Hb_004225_030 Hb_010368_010 Hb_010368_010 Hb_181729_010--Hb_010368_010 Hb_002234_180 Hb_002234_180 Hb_181729_010--Hb_002234_180 Hb_008013_050 Hb_008013_050 Hb_181729_010--Hb_008013_050 Hb_181729_010--Hb_002016_170 Hb_019280_050 Hb_019280_050 Hb_181729_010--Hb_019280_050 Hb_171376_010 Hb_171376_010 Hb_181729_010--Hb_171376_010 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_011316_100 Hb_011316_100 Hb_000317_490--Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030 Hb_002374_570 Hb_002374_570 Hb_002016_170--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002016_170--Hb_003994_290 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_002799_110 Hb_002799_110 Hb_000836_450--Hb_002799_110 Hb_003086_150 Hb_003086_150 Hb_000836_450--Hb_003086_150 Hb_001218_040 Hb_001218_040 Hb_000836_450--Hb_001218_040 Hb_000340_570 Hb_000340_570 Hb_000836_450--Hb_000340_570 Hb_000059_360 Hb_000059_360 Hb_000836_450--Hb_000059_360 Hb_000205_090 Hb_000205_090 Hb_000836_450--Hb_000205_090 Hb_048476_110 Hb_048476_110 Hb_000025_210--Hb_048476_110 Hb_003734_060 Hb_003734_060 Hb_000025_210--Hb_003734_060 Hb_000025_210--Hb_002183_070 Hb_034482_020 Hb_034482_020 Hb_000025_210--Hb_034482_020 Hb_000025_210--Hb_000059_360 Hb_000046_100 Hb_000046_100 Hb_000025_210--Hb_000046_100 Hb_005569_020 Hb_005569_020 Hb_004225_030--Hb_005569_020 Hb_004225_030--Hb_002016_170 Hb_004225_030--Hb_000046_100 Hb_000108_070 Hb_000108_070 Hb_004225_030--Hb_000108_070 Hb_004225_030--Hb_000025_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.85176 1.63358 6.07531 1.83656 1.20594 1.74436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73144 2.63839 6.30787 1.44489 2.8037

CAGE analysis