Hb_002183_070

Information

Type -
Description -
Location Contig2183: 92007-96883
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04600g
description POPTRDRAFT_576267; hypothetical protein
nr
ID XP_012087759.1
description PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SLA8
description Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Arabidopsis thaliana GN=MOD1 PE=1 SV=1
trembl
ID A0A067JL38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25533 PE=4 SV=1
Gene Ontology
ID GO:0005835
description enoyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22507: 91006-96905 , PASA_asmbl_22508: 95278-95643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002183_070 0.0 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
2 Hb_000046_100 0.1062809888 - - NADH dehydrogenase, putative [Ricinus communis]
3 Hb_002374_570 0.11065523 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
4 Hb_003994_290 0.1146876088 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
5 Hb_002016_170 0.1183091365 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000317_490 0.1198698569 - - Gibberellin receptor GID1, putative [Ricinus communis]
7 Hb_021596_090 0.1205559797 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
8 Hb_001604_060 0.1215342567 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
9 Hb_011316_100 0.1226518719 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
10 Hb_001983_020 0.1239251344 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
11 Hb_035273_030 0.1261380253 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
12 Hb_000174_210 0.1271105868 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
13 Hb_005245_080 0.1291961727 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
14 Hb_008686_080 0.131343677 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
15 Hb_000025_210 0.1322302841 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
16 Hb_000668_040 0.1367653939 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
17 Hb_000069_600 0.137323905 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
18 Hb_000103_320 0.1378906432 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_000627_150 0.1390909597 - - PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Jatropha curcas]
20 Hb_000836_450 0.1396341141 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002183_070 Hb_002183_070 Hb_000046_100 Hb_000046_100 Hb_002183_070--Hb_000046_100 Hb_002374_570 Hb_002374_570 Hb_002183_070--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002183_070--Hb_003994_290 Hb_002016_170 Hb_002016_170 Hb_002183_070--Hb_002016_170 Hb_000317_490 Hb_000317_490 Hb_002183_070--Hb_000317_490 Hb_021596_090 Hb_021596_090 Hb_002183_070--Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000103_320 Hb_000103_320 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_002374_570--Hb_002016_170 Hb_118419_010 Hb_118419_010 Hb_002374_570--Hb_118419_010 Hb_001124_090 Hb_001124_090 Hb_002374_570--Hb_001124_090 Hb_000457_180 Hb_000457_180 Hb_002374_570--Hb_000457_180 Hb_001318_250 Hb_001318_250 Hb_002374_570--Hb_001318_250 Hb_003728_060 Hb_003728_060 Hb_002374_570--Hb_003728_060 Hb_032808_010 Hb_032808_010 Hb_003994_290--Hb_032808_010 Hb_003994_290--Hb_002016_170 Hb_001711_020 Hb_001711_020 Hb_003994_290--Hb_001711_020 Hb_008511_120 Hb_008511_120 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_000521_080 Hb_000521_080 Hb_003994_290--Hb_000521_080 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_181729_010 Hb_181729_010 Hb_002016_170--Hb_181729_010 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_000317_490--Hb_002016_170 Hb_011316_100 Hb_011316_100 Hb_000317_490--Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030 Hb_021596_090--Hb_007044_120 Hb_143766_010 Hb_143766_010 Hb_021596_090--Hb_143766_010 Hb_021596_090--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_021596_090--Hb_000638_250 Hb_034299_050 Hb_034299_050 Hb_021596_090--Hb_034299_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0067 6.32046 42.0586 27.951 17.3469 21.0646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3355 37.3295 47.1269 22.5957 18.6338

CAGE analysis