Hb_000046_100

Information

Type -
Description -
Location Contig46: 84180-91353
Sequence    

Annotation

kegg
ID rcu:RCOM_0679150
description NADH dehydrogenase, putative
nr
ID XP_002516841.1
description NADH dehydrogenase, putative [Ricinus communis]
swissprot
ID Q8LGE7
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana GN=At5g18800 PE=1 SV=1
trembl
ID B9RSX2
description NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_0679150 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43611: 84206-91103 , PASA_asmbl_43614: 87883-91103
cDNA
(Sanger)
(ID:Location)		 033_D04.ab1: 84328-90704 , 039_L10.ab1: 84238-90883 , 046_M16r.ab1: 91121-92067

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_100 0.0 - - NADH dehydrogenase, putative [Ricinus communis]
2 Hb_021596_090 0.0641807214 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
3 Hb_000103_320 0.0827596367 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_007044_120 0.0905994307 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
5 Hb_006831_120 0.094728709 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
6 Hb_001218_040 0.0959859336 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
7 Hb_028872_080 0.1006350899 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
8 Hb_000120_960 0.1018877802 - - isocitrate dehydrogenase, putative [Ricinus communis]
9 Hb_000240_090 0.10338408 - - Rab5 [Hevea brasiliensis]
10 Hb_001396_100 0.1047863397 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000668_040 0.1048119419 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
12 Hb_002183_070 0.1062809888 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
13 Hb_000638_250 0.1066106875 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_002660_070 0.1087013661 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
15 Hb_000340_570 0.1088185599 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
16 Hb_005433_040 0.1096327166 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
17 Hb_001279_340 0.1097553464 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
18 Hb_003581_150 0.1104444198 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
19 Hb_007904_260 0.1105985004 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
20 Hb_001776_160 0.1111227438 - - 20S proteasome alpha subunit G1 [Theobroma cacao]

Gene co-expression network

sample Hb_000046_100 Hb_000046_100 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000103_320 Hb_000103_320 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_021596_090--Hb_007044_120 Hb_143766_010 Hb_143766_010 Hb_021596_090--Hb_143766_010 Hb_021596_090--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_021596_090--Hb_000638_250 Hb_034299_050 Hb_034299_050 Hb_021596_090--Hb_034299_050 Hb_000103_320--Hb_000638_250 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_001396_100 Hb_001396_100 Hb_001218_040--Hb_001396_100 Hb_000224_140 Hb_000224_140 Hb_001218_040--Hb_000224_140 Hb_001904_090 Hb_001904_090 Hb_001218_040--Hb_001904_090 Hb_003349_080 Hb_003349_080 Hb_001218_040--Hb_003349_080 Hb_001616_030 Hb_001616_030 Hb_001218_040--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_001218_040--Hb_000680_140 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_017225_020 Hb_017225_020 Hb_028872_080--Hb_017225_020 Hb_010361_010 Hb_010361_010 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_001604_060 Hb_001604_060 Hb_028872_080--Hb_001604_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.4911 18.3977 51.6394 47.8732 35.4115 27.6891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.859 92.6202 116.196 38.272 33.5612

CAGE analysis