Hb_001218_040

Information

Type -
Description -
Location Contig1218: 63467-67323
Sequence    

Annotation

kegg
ID tcc:TCM_034906
description Mitochondrial substrate carrier family protein
nr
ID XP_007018779.1
description Mitochondrial substrate carrier family protein [Theobroma cacao]
swissprot
ID Q9LV81
description Probable mitochondrial adenine nucleotide transporter BTL3 OS=Arabidopsis thaliana GN=At5g64970 PE=2 SV=1
trembl
ID A0A061FN98
description Mitochondrial substrate carrier family protein OS=Theobroma cacao GN=TCM_034906 PE=3 SV=1
Gene Ontology
ID GO:0009536
description probable mitochondrial adenine nucleotide transporter btl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06610: 63762-67408
cDNA
(Sanger)
(ID:Location)		 027_J23.ab1: 65790-67202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001218_040 0.0 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
2 Hb_001396_100 0.0824857283 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000224_140 0.0867063869 - - ribonuclease z, chloroplast, putative [Ricinus communis]
4 Hb_001904_090 0.089686006 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
5 Hb_003349_080 0.0909043805 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
6 Hb_001616_030 0.0922151614 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
7 Hb_000680_140 0.0930457194 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
8 Hb_000668_040 0.093520619 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
9 Hb_001775_110 0.0947886608 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
10 Hb_001776_160 0.0949327889 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
11 Hb_011512_040 0.0956688234 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
12 Hb_000046_100 0.0959859336 - - NADH dehydrogenase, putative [Ricinus communis]
13 Hb_017225_020 0.0968233109 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
14 Hb_006831_120 0.097318898 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
15 Hb_027654_050 0.0976120919 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
16 Hb_000962_040 0.098181332 - - heat shock protein binding protein, putative [Ricinus communis]
17 Hb_153112_030 0.0982355075 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
18 Hb_000103_010 0.100258409 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
19 Hb_000240_090 0.1009385677 - - Rab5 [Hevea brasiliensis]
20 Hb_028872_080 0.1012333692 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001218_040 Hb_001218_040 Hb_001396_100 Hb_001396_100 Hb_001218_040--Hb_001396_100 Hb_000224_140 Hb_000224_140 Hb_001218_040--Hb_000224_140 Hb_001904_090 Hb_001904_090 Hb_001218_040--Hb_001904_090 Hb_003349_080 Hb_003349_080 Hb_001218_040--Hb_003349_080 Hb_001616_030 Hb_001616_030 Hb_001218_040--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_001218_040--Hb_000680_140 Hb_001396_100--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_029866_020 Hb_029866_020 Hb_001396_100--Hb_029866_020 Hb_000240_090 Hb_000240_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_006831_120 Hb_006831_120 Hb_001396_100--Hb_006831_120 Hb_068056_030 Hb_068056_030 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_003349_080--Hb_000318_160 Hb_003050_280 Hb_003050_280 Hb_003349_080--Hb_003050_280 Hb_003349_080--Hb_068056_030 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2861 2.94535 8.72477 6.73965 6.28401 7.0685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5922 24.7308 24.6375 8.72942 11.3699

CAGE analysis