Hb_000025_210

Information

Type -
Description -
Location Contig25: 183576-191311
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07280g
description POPTRDRAFT_833174; hypothetical protein
nr
ID XP_012065860.1
description PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
swissprot
ID O81027
description Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2
trembl
ID A0A067LFA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22742 PE=4 SV=1
Gene Ontology
ID GO:0003824
description hydroxymethylglutaryl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26069: 185389-191193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_210 0.0 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
2 Hb_048476_110 0.1262699933 - - PREDICTED: adagio protein 3 [Jatropha curcas]
3 Hb_003734_060 0.1312884653 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
4 Hb_002183_070 0.1322302841 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
5 Hb_034482_020 0.137183949 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000059_360 0.1423622507 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
7 Hb_000046_100 0.1432945929 - - NADH dehydrogenase, putative [Ricinus communis]
8 Hb_000621_070 0.1465149008 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
9 Hb_002234_060 0.1466314081 - - F-box protein, atfbl3, putative [Ricinus communis]
10 Hb_002835_240 0.1482760203 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
11 Hb_007044_120 0.1501792671 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
12 Hb_004837_270 0.151459562 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
13 Hb_006487_070 0.1518296924 - - PREDICTED: rop guanine nucleotide exchange factor 14 [Jatropha curcas]
14 Hb_002374_570 0.1519709222 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_028872_080 0.1528697359 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
16 Hb_021596_090 0.1528768168 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
17 Hb_000627_150 0.1529225577 - - PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Jatropha curcas]
18 Hb_003813_030 0.156011365 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
19 Hb_000815_070 0.1567226346 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
20 Hb_050514_010 0.1578887919 - - hypothetical protein 29 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000025_210 Hb_000025_210 Hb_048476_110 Hb_048476_110 Hb_000025_210--Hb_048476_110 Hb_003734_060 Hb_003734_060 Hb_000025_210--Hb_003734_060 Hb_002183_070 Hb_002183_070 Hb_000025_210--Hb_002183_070 Hb_034482_020 Hb_034482_020 Hb_000025_210--Hb_034482_020 Hb_000059_360 Hb_000059_360 Hb_000025_210--Hb_000059_360 Hb_000046_100 Hb_000046_100 Hb_000025_210--Hb_000046_100 Hb_048476_110--Hb_000059_360 Hb_003813_030 Hb_003813_030 Hb_048476_110--Hb_003813_030 Hb_000000_210 Hb_000000_210 Hb_048476_110--Hb_000000_210 Hb_007044_120 Hb_007044_120 Hb_048476_110--Hb_007044_120 Hb_001277_070 Hb_001277_070 Hb_048476_110--Hb_001277_070 Hb_000580_090 Hb_000580_090 Hb_048476_110--Hb_000580_090 Hb_002168_060 Hb_002168_060 Hb_003734_060--Hb_002168_060 Hb_004619_080 Hb_004619_080 Hb_003734_060--Hb_004619_080 Hb_028872_080 Hb_028872_080 Hb_003734_060--Hb_028872_080 Hb_002871_190 Hb_002871_190 Hb_003734_060--Hb_002871_190 Hb_002374_570 Hb_002374_570 Hb_003734_060--Hb_002374_570 Hb_002183_070--Hb_000046_100 Hb_002183_070--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002183_070--Hb_003994_290 Hb_002016_170 Hb_002016_170 Hb_002183_070--Hb_002016_170 Hb_000317_490 Hb_000317_490 Hb_002183_070--Hb_000317_490 Hb_021596_090 Hb_021596_090 Hb_002183_070--Hb_021596_090 Hb_002028_150 Hb_002028_150 Hb_034482_020--Hb_002028_150 Hb_000976_430 Hb_000976_430 Hb_034482_020--Hb_000976_430 Hb_004116_140 Hb_004116_140 Hb_034482_020--Hb_004116_140 Hb_002374_100 Hb_002374_100 Hb_034482_020--Hb_002374_100 Hb_000621_070 Hb_000621_070 Hb_034482_020--Hb_000621_070 Hb_000815_070 Hb_000815_070 Hb_034482_020--Hb_000815_070 Hb_000059_360--Hb_007044_120 Hb_000059_360--Hb_002374_100 Hb_003207_190 Hb_003207_190 Hb_000059_360--Hb_003207_190 Hb_001221_210 Hb_001221_210 Hb_000059_360--Hb_001221_210 Hb_000059_360--Hb_003813_030 Hb_000046_100--Hb_021596_090 Hb_000103_320 Hb_000103_320 Hb_000046_100--Hb_000103_320 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_000046_100--Hb_028872_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1428 2.19404 24.1401 8.67181 13.9124 5.74032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5249 14.1649 26.8741 10.786 9.01214

CAGE analysis