Hb_005569_020

Information

Type -
Description -
Location Contig5569: 21227-28177
Sequence    

Annotation

kegg
ID rcu:RCOM_0747070
description hypothetical protein
nr
ID XP_002530135.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93XX4
description C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2
trembl
ID B9SVW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0747070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48587: 21103-27717
cDNA
(Sanger)
(ID:Location)		 019_N04.ab1: 24269-27717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005569_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001096_110 0.1032478135 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
3 Hb_000141_020 0.1152442705 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
4 Hb_010407_180 0.1210404078 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
5 Hb_000406_120 0.1211510106 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
6 Hb_001159_080 0.1223151136 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
7 Hb_000108_070 0.1226284473 - - alpha-tubulin 1 [Hevea brasiliensis]
8 Hb_003582_040 0.1268710521 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
9 Hb_011316_060 0.136562433 - - alpha-l-fucosidase, putative [Ricinus communis]
10 Hb_006711_060 0.1391464479 - - Tubulin beta-1 chain [Morus notabilis]
11 Hb_002045_180 0.1413215807 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
12 Hb_001279_340 0.1428616011 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
13 Hb_000592_020 0.1436601729 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_003581_260 0.1448437207 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
15 Hb_000046_100 0.1455880762 - - NADH dehydrogenase, putative [Ricinus communis]
16 Hb_003849_100 0.1456660879 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
17 Hb_000125_030 0.1459165064 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
18 Hb_003994_190 0.145924278 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006647_020 0.1476982772 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
20 Hb_004225_030 0.1503797836 - - hypothetical protein F383_15788 [Gossypium arboreum]

Gene co-expression network

sample Hb_005569_020 Hb_005569_020 Hb_001096_110 Hb_001096_110 Hb_005569_020--Hb_001096_110 Hb_000141_020 Hb_000141_020 Hb_005569_020--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_005569_020--Hb_010407_180 Hb_000406_120 Hb_000406_120 Hb_005569_020--Hb_000406_120 Hb_001159_080 Hb_001159_080 Hb_005569_020--Hb_001159_080 Hb_000108_070 Hb_000108_070 Hb_005569_020--Hb_000108_070 Hb_001096_110--Hb_001159_080 Hb_003581_260 Hb_003581_260 Hb_001096_110--Hb_003581_260 Hb_001096_110--Hb_010407_180 Hb_001279_340 Hb_001279_340 Hb_001096_110--Hb_001279_340 Hb_001096_110--Hb_000108_070 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000125_030 Hb_000125_030 Hb_000141_020--Hb_000125_030 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_000141_020--Hb_001159_080 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_010407_180--Hb_001279_340 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_000406_120--Hb_000125_030 Hb_002045_180 Hb_002045_180 Hb_000406_120--Hb_002045_180 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_000406_120--Hb_010407_180 Hb_002056_060 Hb_002056_060 Hb_000406_120--Hb_002056_060 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000125_030 Hb_001159_080--Hb_000099_130 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000108_070--Hb_000120_960
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7987 6.59917 10.7607 12.7589 6.11109 6.63269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9594 19.1237 49.192 6.86676 3.24633

CAGE analysis