Hb_004225_030

Information

Type -
Description -
Location Contig4225: 27847-36967
Sequence    

Annotation

kegg
ID rcu:RCOM_0875760
description hypothetical protein
nr
ID KHG09222.1
description hypothetical protein F383_15788 [Gossypium arboreum]
swissprot
ID Q9FJH9
description P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana GN=At5g60760 PE=2 SV=1
trembl
ID A0A0B0N9A0
description Uncharacterized protein OS=Gossypium arboreum GN=F383_15788 PE=4 SV=1
Gene Ontology
ID GO:0016301
description p-loop ntpase domain-containing protein lpa1 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41810: 27836-37072 , PASA_asmbl_41811: 27836-34449
cDNA
(Sanger)
(ID:Location)		 020_H15.ab1: 30181-37061 , 021_A03.ab1: 27836-28093 , 037_L01.ab1: 27836-28093 , 052_N07.ab1: 30243-37072

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_030 0.0 - - hypothetical protein F383_15788 [Gossypium arboreum]
2 Hb_002234_060 0.1486452876 - - F-box protein, atfbl3, putative [Ricinus communis]
3 Hb_005569_020 0.1503797836 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002016_170 0.1592312823 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000046_100 0.162032174 - - NADH dehydrogenase, putative [Ricinus communis]
6 Hb_000108_070 0.1625227791 - - alpha-tubulin 1 [Hevea brasiliensis]
7 Hb_000025_210 0.1637829352 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
8 Hb_001199_050 0.1669561719 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
9 Hb_007044_120 0.1671071961 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
10 Hb_000592_020 0.1675692892 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_000723_200 0.1684231061 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
12 Hb_003582_040 0.1685812637 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
13 Hb_003849_100 0.1693003051 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
14 Hb_001357_180 0.1707516693 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
15 Hb_000116_010 0.1708943957 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_000120_960 0.17150528 - - isocitrate dehydrogenase, putative [Ricinus communis]
17 Hb_000032_440 0.1735703571 - - protein with unknown function [Ricinus communis]
18 Hb_000258_330 0.1754201786 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_000417_310 0.1757088375 - - uncharacterized protein LOC100272531 [Zea mays]
20 Hb_000805_290 0.177004054 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004225_030 Hb_004225_030 Hb_002234_060 Hb_002234_060 Hb_004225_030--Hb_002234_060 Hb_005569_020 Hb_005569_020 Hb_004225_030--Hb_005569_020 Hb_002016_170 Hb_002016_170 Hb_004225_030--Hb_002016_170 Hb_000046_100 Hb_000046_100 Hb_004225_030--Hb_000046_100 Hb_000108_070 Hb_000108_070 Hb_004225_030--Hb_000108_070 Hb_000025_210 Hb_000025_210 Hb_004225_030--Hb_000025_210 Hb_181729_010 Hb_181729_010 Hb_002234_060--Hb_181729_010 Hb_000317_490 Hb_000317_490 Hb_002234_060--Hb_000317_490 Hb_002234_060--Hb_002016_170 Hb_000836_450 Hb_000836_450 Hb_002234_060--Hb_000836_450 Hb_002234_060--Hb_000025_210 Hb_001096_110 Hb_001096_110 Hb_005569_020--Hb_001096_110 Hb_000141_020 Hb_000141_020 Hb_005569_020--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_005569_020--Hb_010407_180 Hb_000406_120 Hb_000406_120 Hb_005569_020--Hb_000406_120 Hb_001159_080 Hb_001159_080 Hb_005569_020--Hb_001159_080 Hb_005569_020--Hb_000108_070 Hb_002374_570 Hb_002374_570 Hb_002016_170--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002016_170--Hb_003994_290 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_002016_170--Hb_181729_010 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000103_320 Hb_000103_320 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000120_960 Hb_000120_960 Hb_000108_070--Hb_000120_960 Hb_048476_110 Hb_048476_110 Hb_000025_210--Hb_048476_110 Hb_003734_060 Hb_003734_060 Hb_000025_210--Hb_003734_060 Hb_002183_070 Hb_002183_070 Hb_000025_210--Hb_002183_070 Hb_034482_020 Hb_034482_020 Hb_000025_210--Hb_034482_020 Hb_000059_360 Hb_000059_360 Hb_000025_210--Hb_000059_360 Hb_000025_210--Hb_000046_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.30715 4.90594 9.06924 5.93589 5.14042 2.44459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4813 4.5007 18.0093 3.79161 2.61145

CAGE analysis