Hb_007425_010

Information

Type -
Description -
Location Contig7425: 3490-9834
Sequence    

Annotation

kegg
ID pop:POPTR_0019s15200g
description POPTRDRAFT_738992; hypothetical protein
nr
ID NP_001235384.1
description uncharacterized protein LOC100499741 [Glycine max]
swissprot
ID P35135
description Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A0A0YN95
description Putative ubiquitin-conjugating enzyme E2 OS=Gardenia jasminoides PE=2 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2-17 kda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56531: 3423-10042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007425_010 0.0 - - uncharacterized protein LOC100499741 [Glycine max]
2 Hb_026889_030 0.0987802742 - - protein with unknown function [Ricinus communis]
3 Hb_003622_040 0.1009553879 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
4 Hb_005054_210 0.1012864068 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
5 Hb_001019_100 0.1060186177 - - BnaC02g13240D [Brassica napus]
6 Hb_028872_080 0.1091802731 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
7 Hb_000457_180 0.1100928219 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
8 Hb_003362_030 0.1116474065 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
9 Hb_000920_200 0.1127958235 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
10 Hb_011609_020 0.1131384278 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000045_310 0.113635893 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
12 Hb_002374_080 0.1139843737 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
13 Hb_148121_040 0.1145619997 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
14 Hb_006615_240 0.1150823205 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
15 Hb_003728_060 0.1155386363 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
16 Hb_000733_180 0.1155497196 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
17 Hb_003124_150 0.1163164318 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
18 Hb_005167_010 0.1174709673 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
19 Hb_000571_020 0.1178498725 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
20 Hb_006831_120 0.118367324 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007425_010 Hb_007425_010 Hb_026889_030 Hb_026889_030 Hb_007425_010--Hb_026889_030 Hb_003622_040 Hb_003622_040 Hb_007425_010--Hb_003622_040 Hb_005054_210 Hb_005054_210 Hb_007425_010--Hb_005054_210 Hb_001019_100 Hb_001019_100 Hb_007425_010--Hb_001019_100 Hb_028872_080 Hb_028872_080 Hb_007425_010--Hb_028872_080 Hb_000457_180 Hb_000457_180 Hb_007425_010--Hb_000457_180 Hb_026889_030--Hb_028872_080 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_003622_040--Hb_005054_210 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003622_040--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_003622_040--Hb_011344_190 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310 Hb_003124_150 Hb_003124_150 Hb_001019_100--Hb_003124_150 Hb_003360_040 Hb_003360_040 Hb_001019_100--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_001019_100--Hb_000920_200 Hb_000309_130 Hb_000309_130 Hb_001019_100--Hb_000309_130 Hb_002119_130 Hb_002119_130 Hb_001019_100--Hb_002119_130 Hb_006740_030 Hb_006740_030 Hb_001019_100--Hb_006740_030 Hb_006831_120 Hb_006831_120 Hb_028872_080--Hb_006831_120 Hb_017225_020 Hb_017225_020 Hb_028872_080--Hb_017225_020 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_001604_060 Hb_001604_060 Hb_028872_080--Hb_001604_060 Hb_001341_150 Hb_001341_150 Hb_000457_180--Hb_001341_150 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_001279_080 Hb_001279_080 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.1088 83.3107 199.428 186.283 127.468 56.079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
261.106 240.635 261.289 102.217 136.192

CAGE analysis