Hb_024074_010

Information

Type -
Description -
Location Contig24074: 5874-9219
Sequence    

Annotation

kegg
ID rcu:RCOM_1433300
description Cytochrome c, putative
nr
ID XP_012066710.1
description PREDICTED: cytochrome c [Jatropha curcas]
swissprot
ID Q0DI31
description Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1
trembl
ID A0A067LEE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00266 PE=3 SV=1
Gene Ontology
ID GO:0009055
description cytochrome c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25230: 6240-9242 , PASA_asmbl_25231: 5939-9231
cDNA
(Sanger)
(ID:Location)		 022_F13.ab1: 6458-9242 , 026_I15.ab1: 6389-9242 , 029_D24.ab1: 6547-9238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024074_010 0.0 - - PREDICTED: cytochrome c [Jatropha curcas]
2 Hb_000302_140 0.0818849111 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
3 Hb_002260_010 0.0830390155 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
4 Hb_000731_190 0.085929777 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
5 Hb_001053_140 0.0903635484 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
6 Hb_004057_010 0.091801635 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
7 Hb_131181_010 0.0920072194 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
8 Hb_026053_020 0.0927028915 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
9 Hb_010560_030 0.0938838458 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
10 Hb_000676_390 0.0944477837 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
11 Hb_001329_150 0.0976805702 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
12 Hb_000571_020 0.0989712304 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
13 Hb_001188_030 0.099632182 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
14 Hb_001718_030 0.1000655503 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
15 Hb_001252_220 0.1029859206 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
16 Hb_006478_160 0.1071663504 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
17 Hb_000085_350 0.1076037236 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
18 Hb_000189_240 0.1091348406 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_011609_020 0.1098068015 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003669_020 0.1100937859 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]

Gene co-expression network

sample Hb_024074_010 Hb_024074_010 Hb_000302_140 Hb_000302_140 Hb_024074_010--Hb_000302_140 Hb_002260_010 Hb_002260_010 Hb_024074_010--Hb_002260_010 Hb_000731_190 Hb_000731_190 Hb_024074_010--Hb_000731_190 Hb_001053_140 Hb_001053_140 Hb_024074_010--Hb_001053_140 Hb_004057_010 Hb_004057_010 Hb_024074_010--Hb_004057_010 Hb_131181_010 Hb_131181_010 Hb_024074_010--Hb_131181_010 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_006256_030 Hb_006256_030 Hb_002260_010--Hb_006256_030 Hb_001252_220 Hb_001252_220 Hb_002260_010--Hb_001252_220 Hb_003020_150 Hb_003020_150 Hb_002260_010--Hb_003020_150 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_002303_060 Hb_002303_060 Hb_001053_140--Hb_002303_060 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_000189_240 Hb_000189_240 Hb_001053_140--Hb_000189_240 Hb_005269_080 Hb_005269_080 Hb_001053_140--Hb_005269_080 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_001726_040 Hb_001726_040 Hb_004057_010--Hb_001726_040 Hb_006198_070 Hb_006198_070 Hb_004057_010--Hb_006198_070 Hb_004057_010--Hb_001329_150 Hb_131181_010--Hb_026053_020 Hb_131181_010--Hb_018133_020 Hb_000160_180 Hb_000160_180 Hb_131181_010--Hb_000160_180 Hb_001279_080 Hb_001279_080 Hb_131181_010--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_131181_010--Hb_001318_260 Hb_131181_010--Hb_001329_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.8165 25.9243 69.1861 47.2563 16.5243 14.4799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.2684 142.487 63.6537 39.303 34.1621

CAGE analysis