Hb_000331_430

Information

Type -
Description -
Location Contig331: 347847-349200
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10300g
description POPTRDRAFT_575305; hypothetical protein
nr
ID XP_012079897.1
description PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11345 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34799: 347695-349068 , PASA_asmbl_34800: 348426-348593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_430 0.0 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
2 Hb_001449_010 0.0989616788 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002811_290 0.1029207308 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_001234_070 0.110659247 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
5 Hb_002228_070 0.1154506726 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
6 Hb_004041_020 0.1172534261 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
7 Hb_000429_040 0.1210966684 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
8 Hb_020805_080 0.1238558718 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
9 Hb_003362_030 0.1298865257 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
10 Hb_001377_450 0.1302886939 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
11 Hb_001114_080 0.1310039185 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
12 Hb_000302_140 0.1337143007 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
13 Hb_006816_260 0.1374760397 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
14 Hb_003849_130 0.1393946008 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
15 Hb_182424_030 0.1397069639 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
16 Hb_028396_010 0.1410553107 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
17 Hb_000622_180 0.1416490883 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
18 Hb_001096_090 0.1417190154 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
19 Hb_000359_150 0.141853134 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
20 Hb_002946_190 0.1433699142 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000331_430 Hb_000331_430 Hb_001449_010 Hb_001449_010 Hb_000331_430--Hb_001449_010 Hb_002811_290 Hb_002811_290 Hb_000331_430--Hb_002811_290 Hb_001234_070 Hb_001234_070 Hb_000331_430--Hb_001234_070 Hb_002228_070 Hb_002228_070 Hb_000331_430--Hb_002228_070 Hb_004041_020 Hb_004041_020 Hb_000331_430--Hb_004041_020 Hb_000429_040 Hb_000429_040 Hb_000331_430--Hb_000429_040 Hb_001449_010--Hb_002811_290 Hb_001449_010--Hb_001234_070 Hb_048898_010 Hb_048898_010 Hb_001449_010--Hb_048898_010 Hb_003362_030 Hb_003362_030 Hb_001449_010--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001449_010--Hb_171900_060 Hb_004994_210 Hb_004994_210 Hb_002811_290--Hb_004994_210 Hb_006846_130 Hb_006846_130 Hb_002811_290--Hb_006846_130 Hb_001396_210 Hb_001396_210 Hb_002811_290--Hb_001396_210 Hb_003848_040 Hb_003848_040 Hb_002811_290--Hb_003848_040 Hb_003582_070 Hb_003582_070 Hb_001234_070--Hb_003582_070 Hb_001234_070--Hb_171900_060 Hb_000193_110 Hb_000193_110 Hb_001234_070--Hb_000193_110 Hb_001234_070--Hb_004041_020 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_000402_160 Hb_000402_160 Hb_002228_070--Hb_000402_160 Hb_020025_040 Hb_020025_040 Hb_002228_070--Hb_020025_040 Hb_000302_140 Hb_000302_140 Hb_002228_070--Hb_000302_140 Hb_001096_090 Hb_001096_090 Hb_002228_070--Hb_001096_090 Hb_001341_150 Hb_001341_150 Hb_002228_070--Hb_001341_150 Hb_010098_050 Hb_010098_050 Hb_002228_070--Hb_010098_050 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_000413_240 Hb_000413_240 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_000429_040--Hb_000832_190 Hb_001377_450 Hb_001377_450 Hb_000429_040--Hb_001377_450 Hb_000429_040--Hb_000413_240 Hb_000163_100 Hb_000163_100 Hb_000429_040--Hb_000163_100 Hb_004984_030 Hb_004984_030 Hb_000429_040--Hb_004984_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8163 1.05431 6.45322 3.67039 1.07309 1.56991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.14045 5.92655 3.22905 3.3767 1.32504

CAGE analysis