Hb_001234_070

Information

Type -
Description -
Location Contig1234: 127821-129363
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03020g
description haloacid dehalogenase-like hydrolase family protein
nr
ID XP_011032020.1
description PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
swissprot
ID Q9ZVJ5
description Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp OS=Arabidopsis thaliana GN=SGPP PE=1 SV=2
trembl
ID B9MTX7
description Haloacid dehalogenase-like hydrolase family protein OS=Populus trichocarpa GN=POPTR_0001s03020g PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase domain-containing protein sgpp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07117: 126299-128009 , PASA_asmbl_07119: 128329-129371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001234_070 0.0 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
2 Hb_003582_070 0.0558673973 - - conserved hypothetical protein [Ricinus communis]
3 Hb_171900_060 0.0975285655 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
4 Hb_000193_110 0.0977769839 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_004041_020 0.1021038932 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
6 Hb_003362_030 0.1067979397 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
7 Hb_000832_190 0.1088265718 - - Rab3 [Hevea brasiliensis]
8 Hb_000331_430 0.110659247 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
9 Hb_000086_140 0.1111283826 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
10 Hb_004984_030 0.1114714655 - - protein with unknown function [Ricinus communis]
11 Hb_008071_020 0.1130709792 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
12 Hb_000429_040 0.1130970321 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
13 Hb_001188_030 0.1131360789 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
14 Hb_000676_390 0.1153714097 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
15 Hb_012565_070 0.1158797843 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_015299_030 0.1159202564 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
17 Hb_006846_130 0.1159924232 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
18 Hb_098315_020 0.1164190293 - - hypothetical protein M569_15712 [Genlisea aurea]
19 Hb_002811_290 0.1171058876 - - aldo/keto reductase, putative [Ricinus communis]
20 Hb_021068_040 0.118770619 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001234_070 Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_001234_070--Hb_003582_070 Hb_171900_060 Hb_171900_060 Hb_001234_070--Hb_171900_060 Hb_000193_110 Hb_000193_110 Hb_001234_070--Hb_000193_110 Hb_004041_020 Hb_004041_020 Hb_001234_070--Hb_004041_020 Hb_003362_030 Hb_003362_030 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_001188_030 Hb_001188_030 Hb_003582_070--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_003582_070--Hb_015299_030 Hb_001863_130 Hb_001863_130 Hb_003582_070--Hb_001863_130 Hb_003582_070--Hb_000193_110 Hb_003582_070--Hb_003362_030 Hb_002105_100 Hb_002105_100 Hb_171900_060--Hb_002105_100 Hb_021068_040 Hb_021068_040 Hb_171900_060--Hb_021068_040 Hb_000359_150 Hb_000359_150 Hb_171900_060--Hb_000359_150 Hb_003567_030 Hb_003567_030 Hb_171900_060--Hb_003567_030 Hb_006846_130 Hb_006846_130 Hb_171900_060--Hb_006846_130 Hb_000622_180 Hb_000622_180 Hb_000193_110--Hb_000622_180 Hb_000115_220 Hb_000115_220 Hb_000193_110--Hb_000115_220 Hb_011512_070 Hb_011512_070 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_000193_110--Hb_021068_040 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_000413_240 Hb_000413_240 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000429_040 Hb_000429_040 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_004041_020--Hb_012565_070 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_008071_020 Hb_008071_020 Hb_003362_030--Hb_008071_020 Hb_003362_030--Hb_021068_040 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000832_190--Hb_000429_040 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000832_190--Hb_000413_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5551 14.9272 40.3841 34.621 8.21458 8.85421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0529 49.4381 23.6938 14.439 12.7959

CAGE analysis