Hb_003582_070

Information

Type -
Description -
Location Contig3582: 102390-103804
Sequence    

Annotation

kegg
ID rcu:RCOM_0778060
description hypothetical protein
nr
ID XP_002521910.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7E1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0778060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36989: 102261-102379 , PASA_asmbl_36990: 102916-103915 , PASA_asmbl_36991: 102659-103915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001234_070 0.0558673973 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
3 Hb_001188_030 0.0937578207 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
4 Hb_015299_030 0.097178695 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_001863_130 0.1029193078 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
6 Hb_000193_110 0.1040450053 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
7 Hb_003362_030 0.1053913086 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
8 Hb_000086_140 0.1060189697 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
9 Hb_000676_390 0.1064841826 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
10 Hb_000115_220 0.1082180894 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
11 Hb_004041_020 0.1085195459 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
12 Hb_000832_190 0.1091042471 - - Rab3 [Hevea brasiliensis]
13 Hb_008071_020 0.1092774364 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
14 Hb_098315_020 0.1108260912 - - hypothetical protein M569_15712 [Genlisea aurea]
15 Hb_171900_060 0.1126976297 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
16 Hb_001511_260 0.1145602353 - - tryptophan biosynthesis protein, putative [Ricinus communis]
17 Hb_001431_080 0.1152870304 - - 40S ribosomal protein S11, putative [Ricinus communis]
18 Hb_004984_030 0.1153632971 - - protein with unknown function [Ricinus communis]
19 Hb_012565_070 0.1169454498 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_000359_150 0.1173640565 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003582_070 Hb_003582_070 Hb_001234_070 Hb_001234_070 Hb_003582_070--Hb_001234_070 Hb_001188_030 Hb_001188_030 Hb_003582_070--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_003582_070--Hb_015299_030 Hb_001863_130 Hb_001863_130 Hb_003582_070--Hb_001863_130 Hb_000193_110 Hb_000193_110 Hb_003582_070--Hb_000193_110 Hb_003362_030 Hb_003362_030 Hb_003582_070--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001234_070--Hb_171900_060 Hb_001234_070--Hb_000193_110 Hb_004041_020 Hb_004041_020 Hb_001234_070--Hb_004041_020 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_001718_030 Hb_001718_030 Hb_001188_030--Hb_001718_030 Hb_000676_390 Hb_000676_390 Hb_001188_030--Hb_000676_390 Hb_001431_080 Hb_001431_080 Hb_001188_030--Hb_001431_080 Hb_006355_040 Hb_006355_040 Hb_001188_030--Hb_006355_040 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_015299_030--Hb_001431_080 Hb_002811_170 Hb_002811_170 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_015299_030--Hb_001931_010 Hb_098315_020 Hb_098315_020 Hb_015299_030--Hb_098315_020 Hb_002909_020 Hb_002909_020 Hb_001863_130--Hb_002909_020 Hb_001511_260 Hb_001511_260 Hb_001863_130--Hb_001511_260 Hb_001377_450 Hb_001377_450 Hb_001863_130--Hb_001377_450 Hb_001863_130--Hb_001234_070 Hb_010560_030 Hb_010560_030 Hb_001863_130--Hb_010560_030 Hb_000622_180 Hb_000622_180 Hb_000193_110--Hb_000622_180 Hb_000115_220 Hb_000115_220 Hb_000193_110--Hb_000115_220 Hb_011512_070 Hb_011512_070 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_021068_040 Hb_021068_040 Hb_000193_110--Hb_021068_040 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_008071_020 Hb_008071_020 Hb_003362_030--Hb_008071_020 Hb_003362_030--Hb_021068_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4455 3.48394 8.99616 7.9361 2.14343 2.44456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24911 12.5156 5.44177 2.15067 2.73211

CAGE analysis