Hb_002909_020

Information

Type -
Description -
Location Contig2909: 4640-9859
Sequence    

Annotation

kegg
ID rcu:RCOM_1327960
description hypothetical protein
nr
ID XP_012070250.1
description PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02565 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30461: 4862-9901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_020 0.0 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
2 Hb_001863_130 0.1036679259 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
3 Hb_003126_130 0.1248023539 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
4 Hb_000832_190 0.1299072404 - - Rab3 [Hevea brasiliensis]
5 Hb_001377_450 0.1310755146 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_004984_030 0.1367663496 - - protein with unknown function [Ricinus communis]
7 Hb_007741_130 0.1382055162 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
8 Hb_004994_210 0.1420776432 - - phosphomannomutase family protein [Populus trichocarpa]
9 Hb_001234_070 0.1449807451 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
10 Hb_003582_070 0.1461594898 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003362_030 0.1467050215 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
12 Hb_005181_160 0.1470197743 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
13 Hb_118282_010 0.1471386522 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
14 Hb_002249_070 0.1520146901 - - gcn4-complementing protein, putative [Ricinus communis]
15 Hb_000740_040 0.1521715575 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
16 Hb_001073_080 0.1529018904 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
17 Hb_053709_050 0.1549072843 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000173_050 0.1553731299 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
19 Hb_000796_010 0.1575189967 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
20 Hb_001114_080 0.158034752 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]

Gene co-expression network

sample Hb_002909_020 Hb_002909_020 Hb_001863_130 Hb_001863_130 Hb_002909_020--Hb_001863_130 Hb_003126_130 Hb_003126_130 Hb_002909_020--Hb_003126_130 Hb_000832_190 Hb_000832_190 Hb_002909_020--Hb_000832_190 Hb_001377_450 Hb_001377_450 Hb_002909_020--Hb_001377_450 Hb_004984_030 Hb_004984_030 Hb_002909_020--Hb_004984_030 Hb_007741_130 Hb_007741_130 Hb_002909_020--Hb_007741_130 Hb_003582_070 Hb_003582_070 Hb_001863_130--Hb_003582_070 Hb_001511_260 Hb_001511_260 Hb_001863_130--Hb_001511_260 Hb_001863_130--Hb_001377_450 Hb_001234_070 Hb_001234_070 Hb_001863_130--Hb_001234_070 Hb_010560_030 Hb_010560_030 Hb_001863_130--Hb_010560_030 Hb_007894_050 Hb_007894_050 Hb_003126_130--Hb_007894_050 Hb_003126_130--Hb_001377_450 Hb_001073_080 Hb_001073_080 Hb_003126_130--Hb_001073_080 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_004041_020 Hb_004041_020 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_001377_450--Hb_000429_040 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_001377_450--Hb_001073_080 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060 Hb_001191_080 Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_001863_160 Hb_001863_160 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.47984 12.4227 47.1646 36.463 4.01182 6.18851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2627 32.3485 20.4305 9.07906 13.7154

CAGE analysis