Hb_003126_130

Information

Type -
Description -
Location Contig3126: 80003-85811
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01600g
description POPTRDRAFT_716898; inositol-1-monophosphatase family protein
nr
ID XP_002307895.2
description inositol-1-monophosphatase family protein [Populus trichocarpa]
swissprot
ID P54928
description Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=1 SV=1
trembl
ID B9HCU6
description Inositol-1-monophosphatase family protein OS=Populus trichocarpa GN=POPTR_0006s01600g PE=4 SV=1
Gene Ontology
ID GO:0046854
description l-galactose-1-phosphate phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33101: 79969-85877 , PASA_asmbl_33102: 79949-85912
cDNA
(Sanger)
(ID:Location)		 002_M10.ab1: 80694-85910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_130 0.0 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
2 Hb_007894_050 0.1007801007 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
3 Hb_001377_450 0.1118480312 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
4 Hb_001073_080 0.1125537782 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
5 Hb_002909_020 0.1248023539 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
6 Hb_001019_150 0.1315792285 - - Acyl-protein thioesterase, putative [Ricinus communis]
7 Hb_000796_010 0.1327992004 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
8 Hb_001301_340 0.1328959714 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
9 Hb_000740_040 0.1448098539 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
10 Hb_001114_080 0.1480995675 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
11 Hb_001863_130 0.1527130744 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
12 Hb_000429_040 0.1556045947 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
13 Hb_180343_010 0.1583053979 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
14 Hb_004257_010 0.1584856583 - - CMP-sialic acid transporter, putative [Ricinus communis]
15 Hb_000035_270 0.160653641 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
16 Hb_005460_060 0.1622297555 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
17 Hb_004994_210 0.1627928097 - - phosphomannomutase family protein [Populus trichocarpa]
18 Hb_000160_180 0.1634290448 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
19 Hb_000035_240 0.1634807661 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000723_340 0.1651400982 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]

Gene co-expression network

sample Hb_003126_130 Hb_003126_130 Hb_007894_050 Hb_007894_050 Hb_003126_130--Hb_007894_050 Hb_001377_450 Hb_001377_450 Hb_003126_130--Hb_001377_450 Hb_001073_080 Hb_001073_080 Hb_003126_130--Hb_001073_080 Hb_002909_020 Hb_002909_020 Hb_003126_130--Hb_002909_020 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010 Hb_007894_050--Hb_001073_080 Hb_001301_340 Hb_001301_340 Hb_007894_050--Hb_001301_340 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_000392_550 Hb_000392_550 Hb_007894_050--Hb_000392_550 Hb_007894_050--Hb_001377_450 Hb_000429_040 Hb_000429_040 Hb_001377_450--Hb_000429_040 Hb_000832_190 Hb_000832_190 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_001377_450--Hb_001073_080 Hb_000390_090 Hb_000390_090 Hb_001073_080--Hb_000390_090 Hb_001073_080--Hb_001301_340 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_001073_080--Hb_000429_040 Hb_001863_130 Hb_001863_130 Hb_002909_020--Hb_001863_130 Hb_002909_020--Hb_000832_190 Hb_002909_020--Hb_001377_450 Hb_004984_030 Hb_004984_030 Hb_002909_020--Hb_004984_030 Hb_007741_130 Hb_007741_130 Hb_002909_020--Hb_007741_130 Hb_003106_100 Hb_003106_100 Hb_001019_150--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_001019_150--Hb_002876_020 Hb_000056_070 Hb_000056_070 Hb_001019_150--Hb_000056_070 Hb_007827_010 Hb_007827_010 Hb_001019_150--Hb_007827_010 Hb_001329_150 Hb_001329_150 Hb_001019_150--Hb_001329_150 Hb_001353_010 Hb_001353_010 Hb_001019_150--Hb_001353_010 Hb_001114_080 Hb_001114_080 Hb_000796_010--Hb_001114_080 Hb_001019_100 Hb_001019_100 Hb_000796_010--Hb_001019_100 Hb_007425_010 Hb_007425_010 Hb_000796_010--Hb_007425_010 Hb_066720_010 Hb_066720_010 Hb_000796_010--Hb_066720_010 Hb_001059_160 Hb_001059_160 Hb_000796_010--Hb_001059_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48955 1.70169 18.256 12.829 2.15154 3.1899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9196 14.8126 7.93689 6.03829 8.75581

CAGE analysis