Hb_000390_090

Information

Type -
Description -
Location Contig390: 126952-130796
Sequence    

Annotation

kegg
ID rcu:RCOM_1327960
description hypothetical protein
nr
ID XP_012070250.1
description PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02565 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39084: 127022-130796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_090 0.0 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
2 Hb_000413_240 0.0711000455 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
3 Hb_009252_060 0.0860828926 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
4 Hb_000413_060 0.0877393465 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
5 Hb_000163_100 0.0924932087 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
6 Hb_001073_080 0.1007081763 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
7 Hb_011053_010 0.1010717052 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
8 Hb_002028_090 0.107400871 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
9 Hb_001301_340 0.108160372 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
10 Hb_003556_030 0.1115623623 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
11 Hb_000035_240 0.1120003063 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007416_050 0.1146639235 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
13 Hb_000008_370 0.1147642333 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
14 Hb_001178_010 0.1162050232 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
15 Hb_000429_040 0.1177099204 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
16 Hb_019053_060 0.1208695353 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
17 Hb_001863_380 0.1213344352 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
18 Hb_000599_260 0.1216447642 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
19 Hb_001804_090 0.1238701967 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
20 Hb_004041_020 0.1245021038 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]

Gene co-expression network

sample Hb_000390_090 Hb_000390_090 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000413_060 Hb_000413_060 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_000413_240--Hb_000163_100 Hb_001863_380 Hb_001863_380 Hb_000413_240--Hb_001863_380 Hb_004041_020 Hb_004041_020 Hb_000413_240--Hb_004041_020 Hb_000413_240--Hb_000413_060 Hb_002946_190 Hb_002946_190 Hb_000413_240--Hb_002946_190 Hb_019053_060 Hb_019053_060 Hb_009252_060--Hb_019053_060 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_001863_120 Hb_001863_120 Hb_009252_060--Hb_001863_120 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_009252_060--Hb_000413_060 Hb_000413_060--Hb_000163_100 Hb_003556_030 Hb_003556_030 Hb_000413_060--Hb_003556_030 Hb_000413_060--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110 Hb_000163_100--Hb_001863_380 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040 Hb_007894_050 Hb_007894_050 Hb_001073_080--Hb_007894_050 Hb_001301_340 Hb_001301_340 Hb_001073_080--Hb_001301_340 Hb_001377_450 Hb_001377_450 Hb_001073_080--Hb_001377_450 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_001073_080--Hb_000429_040 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_146255_020 Hb_146255_020 Hb_011053_010--Hb_146255_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7621 25.2328 140.632 57.3438 29.3711 30.8163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.2234 135.24 44.7753 26.6812 74.1417

CAGE analysis