Hb_003556_030

Information

Type -
Description -
Location Contig3556: 15983-23221
Sequence    

Annotation

kegg
ID vvi:100247377
description uncharacterized oxidoreductase C663.09c
nr
ID XP_012075520.1
description PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
swissprot
ID Q7Z9I2
description Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.09c PE=3 SV=1
trembl
ID A0A067KRE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09138 PE=4 SV=1
Gene Ontology
ID GO:0016491
description uncharacterized oxidoreductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36797: 15987-23182 , PASA_asmbl_36800: 22576-22874
cDNA
(Sanger)
(ID:Location)		 014_B24.ab1: 16296-23182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003556_030 0.0 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
2 Hb_000413_060 0.0735538249 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
3 Hb_001329_090 0.1052154614 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000905_120 0.1062364502 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
5 Hb_000413_240 0.1089281231 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
6 Hb_000390_090 0.1115623623 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
7 Hb_003077_150 0.1125685502 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
8 Hb_001541_110 0.1149310462 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000163_100 0.1161609947 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
10 Hb_000035_240 0.1232623604 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002972_010 0.1293159214 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
12 Hb_001105_170 0.132427486 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
13 Hb_011053_010 0.1332719152 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
14 Hb_001114_160 0.1408332078 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
15 Hb_012340_090 0.1410512751 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
16 Hb_000012_250 0.1416169142 - - hypothetical protein L484_019524 [Morus notabilis]
17 Hb_004041_020 0.1424387888 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
18 Hb_007451_040 0.1432508458 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
19 Hb_001195_460 0.1457726773 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
20 Hb_000003_780 0.146056627 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_003556_030 Hb_003556_030 Hb_000413_060 Hb_000413_060 Hb_003556_030--Hb_000413_060 Hb_001329_090 Hb_001329_090 Hb_003556_030--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003556_030--Hb_000905_120 Hb_000413_240 Hb_000413_240 Hb_003556_030--Hb_000413_240 Hb_000390_090 Hb_000390_090 Hb_003556_030--Hb_000390_090 Hb_003077_150 Hb_003077_150 Hb_003556_030--Hb_003077_150 Hb_000163_100 Hb_000163_100 Hb_000413_060--Hb_000163_100 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_000390_090 Hb_011053_010 Hb_011053_010 Hb_000413_060--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110 Hb_001329_090--Hb_003077_150 Hb_001329_090--Hb_001541_110 Hb_000035_240 Hb_000035_240 Hb_001329_090--Hb_000035_240 Hb_001329_090--Hb_000905_120 Hb_001329_090--Hb_000413_060 Hb_007263_010 Hb_007263_010 Hb_000905_120--Hb_007263_010 Hb_000905_120--Hb_001541_110 Hb_000905_120--Hb_003077_150 Hb_000905_120--Hb_000413_060 Hb_007451_040 Hb_007451_040 Hb_000905_120--Hb_007451_040 Hb_000413_240--Hb_000163_100 Hb_001863_380 Hb_001863_380 Hb_000413_240--Hb_001863_380 Hb_000413_240--Hb_000390_090 Hb_004041_020 Hb_004041_020 Hb_000413_240--Hb_004041_020 Hb_002946_190 Hb_002946_190 Hb_000413_240--Hb_002946_190 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_000390_090--Hb_011053_010 Hb_009771_060 Hb_009771_060 Hb_003077_150--Hb_009771_060 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51972 2.31344 21.4169 6.21441 5.22308 2.81929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.54029 13.0221 4.18466 2.33753 8.28272

CAGE analysis