Hb_000035_240

Information

Type -
Description -
Location Contig35: 287003-297499
Sequence    

Annotation

kegg
ID rcu:RCOM_0920840
description hypothetical protein
nr
ID XP_002515420.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8YM73
description Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr5067 PE=3 SV=1
trembl
ID B9RNV1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36418: 287334-297507
cDNA
(Sanger)
(ID:Location)		 010_O06r.ab1: 286498-287311 , 014_H14.ab1: 287339-297507 , 014_I11.ab1: 287427-297507

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001301_340 0.0877152267 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
3 Hb_001946_140 0.0932287901 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
4 Hb_001329_090 0.1109407106 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000390_090 0.1120003063 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
6 Hb_000008_370 0.1129925684 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
7 Hb_009252_060 0.1143501026 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
8 Hb_001073_080 0.1152353858 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
9 Hb_000413_060 0.1170923868 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
10 Hb_001863_120 0.1215911191 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_003556_030 0.1232623604 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
12 Hb_000163_100 0.1245273193 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
13 Hb_001541_110 0.126225316 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_001056_030 0.1262725125 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
15 Hb_025194_060 0.1274871381 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_014834_130 0.1277164473 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
17 Hb_000012_250 0.1277213946 - - hypothetical protein L484_019524 [Morus notabilis]
18 Hb_000413_240 0.1279326375 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
19 Hb_021650_040 0.1280259068 - - EG2771 [Manihot esculenta]
20 Hb_007894_050 0.129994091 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000035_240 Hb_000035_240 Hb_001301_340 Hb_001301_340 Hb_000035_240--Hb_001301_340 Hb_001946_140 Hb_001946_140 Hb_000035_240--Hb_001946_140 Hb_001329_090 Hb_001329_090 Hb_000035_240--Hb_001329_090 Hb_000390_090 Hb_000390_090 Hb_000035_240--Hb_000390_090 Hb_000008_370 Hb_000008_370 Hb_000035_240--Hb_000008_370 Hb_009252_060 Hb_009252_060 Hb_000035_240--Hb_009252_060 Hb_007894_050 Hb_007894_050 Hb_001301_340--Hb_007894_050 Hb_000317_260 Hb_000317_260 Hb_001301_340--Hb_000317_260 Hb_000394_180 Hb_000394_180 Hb_001301_340--Hb_000394_180 Hb_001369_790 Hb_001369_790 Hb_001301_340--Hb_001369_790 Hb_000392_550 Hb_000392_550 Hb_001301_340--Hb_000392_550 Hb_021650_040 Hb_021650_040 Hb_001946_140--Hb_021650_040 Hb_004440_020 Hb_004440_020 Hb_001946_140--Hb_004440_020 Hb_001946_140--Hb_001301_340 Hb_007534_050 Hb_007534_050 Hb_001946_140--Hb_007534_050 Hb_000163_100 Hb_000163_100 Hb_001946_140--Hb_000163_100 Hb_003556_030 Hb_003556_030 Hb_001329_090--Hb_003556_030 Hb_003077_150 Hb_003077_150 Hb_001329_090--Hb_003077_150 Hb_001541_110 Hb_001541_110 Hb_001329_090--Hb_001541_110 Hb_000905_120 Hb_000905_120 Hb_001329_090--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_001329_090--Hb_000413_060 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_000390_090--Hb_009252_060 Hb_000390_090--Hb_000413_060 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_000008_370--Hb_000390_090 Hb_000008_370--Hb_009252_060 Hb_000008_370--Hb_001301_340 Hb_001450_030 Hb_001450_030 Hb_000008_370--Hb_001450_030 Hb_068194_010 Hb_068194_010 Hb_000008_370--Hb_068194_010 Hb_019053_060 Hb_019053_060 Hb_009252_060--Hb_019053_060 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_001863_120 Hb_001863_120 Hb_009252_060--Hb_001863_120 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_009252_060--Hb_000413_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95444 1.95114 30.9296 11.0754 4.92058 5.49508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6808 22.1202 6.99687 7.05787 20.612

CAGE analysis