Hb_001329_090

Information

Type -
Description -
Location Contig1329: 61460-64367
Sequence    

Annotation

kegg
ID rcu:RCOM_1344780
description hypothetical protein
nr
ID XP_002515216.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN77
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1344780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09389: 61199-63598 , PASA_asmbl_09390: 61199-64283 , PASA_asmbl_09391: 62663-62816
cDNA
(Sanger)
(ID:Location)		 019_L06.ab1: 61324-63596

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003556_030 0.1052154614 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
3 Hb_003077_150 0.1061215972 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
4 Hb_001541_110 0.10774377 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000035_240 0.1109407106 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000905_120 0.1174912249 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
7 Hb_000413_060 0.1220985566 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
8 Hb_021650_040 0.124182021 - - EG2771 [Manihot esculenta]
9 Hb_021576_080 0.1333911932 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
10 Hb_007451_040 0.1352898133 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
11 Hb_000740_040 0.1382477757 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
12 Hb_001102_050 0.1382697647 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
13 Hb_000005_180 0.1403852695 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001488_030 0.1423478824 - - biotin carboxyl carrier protein [Vernicia fordii]
15 Hb_005914_050 0.1438837657 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
16 Hb_000390_090 0.1452676193 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
17 Hb_007263_010 0.1463707268 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_000163_100 0.1473909369 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
19 Hb_001946_140 0.1474882435 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_001863_120 0.1513445386 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001329_090 Hb_001329_090 Hb_003556_030 Hb_003556_030 Hb_001329_090--Hb_003556_030 Hb_003077_150 Hb_003077_150 Hb_001329_090--Hb_003077_150 Hb_001541_110 Hb_001541_110 Hb_001329_090--Hb_001541_110 Hb_000035_240 Hb_000035_240 Hb_001329_090--Hb_000035_240 Hb_000905_120 Hb_000905_120 Hb_001329_090--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_001329_090--Hb_000413_060 Hb_003556_030--Hb_000413_060 Hb_003556_030--Hb_000905_120 Hb_000413_240 Hb_000413_240 Hb_003556_030--Hb_000413_240 Hb_000390_090 Hb_000390_090 Hb_003556_030--Hb_000390_090 Hb_003556_030--Hb_003077_150 Hb_009771_060 Hb_009771_060 Hb_003077_150--Hb_009771_060 Hb_003077_150--Hb_000905_120 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_001301_340 Hb_001301_340 Hb_000035_240--Hb_001301_340 Hb_001946_140 Hb_001946_140 Hb_000035_240--Hb_001946_140 Hb_000035_240--Hb_000390_090 Hb_000008_370 Hb_000008_370 Hb_000035_240--Hb_000008_370 Hb_009252_060 Hb_009252_060 Hb_000035_240--Hb_009252_060 Hb_007263_010 Hb_007263_010 Hb_000905_120--Hb_007263_010 Hb_000905_120--Hb_001541_110 Hb_000905_120--Hb_000413_060 Hb_000905_120--Hb_007451_040 Hb_000163_100 Hb_000163_100 Hb_000413_060--Hb_000163_100 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_000390_090 Hb_011053_010 Hb_011053_010 Hb_000413_060--Hb_011053_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60465 2.01938 37.2585 9.59498 4.78162 5.44984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0234 15.484 6.48164 2.57117 17.1247

CAGE analysis