Hb_000975_240

Information

Type -
Description -
Location Contig975: 203920-219319
Sequence    

Annotation

kegg
ID egr:104436374
description histone H2A
nr
ID KDP21535.1
description hypothetical protein JCGZ_22006 [Jatropha curcas]
swissprot
ID Q9M531
description Histone H2A OS=Euphorbia esula PE=2 SV=1
trembl
ID A0A067JNE6
description Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64013: 202484-204076 , PASA_asmbl_64014: 203140-203369 , PASA_asmbl_64015: 218076-219332 , PASA_asmbl_64016: 213974-215244 , PASA_asmbl_64017: 209327-210701 , PASA_asmbl_64018: 214463-214873 , PASA_asmbl_64019: 210224-219330
cDNA
(Sanger)
(ID:Location)		 004_L11.ab1: 202849-204033 , 008_F18.ab1: 202804-204035 , 010_E23.ab1: 202804-203959 , 011_D11.ab1: 202683-204023 , 012_A05.ab1: 218130-219330 , 012_P24.ab1: 218189-219205 , 014_E15.ab1: 218130-219330 , 019_D16.ab1: 209554-210538 , 019_M24.ab1: 202810-204075 , 022_I21.ab1: 202849-204024 , 027_M18.ab1: 214680-215136 , 032_G17.ab1: 213974-215079 , 042_D01.ab1: 213974-215127 , 045_B09.ab1: 202806-204070 , 047_B23.ab1: 218076-219325 , 049_N03.ab1: 213974-215124

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_240 0.0 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
2 Hb_003077_150 0.1123213059 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_010080_010 0.1125456563 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
4 Hb_009771_060 0.1233682757 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
5 Hb_011053_010 0.126621169 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
6 Hb_000413_060 0.1338293298 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
7 Hb_011386_050 0.1363180313 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
8 Hb_002343_040 0.1364479086 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000905_120 0.1426982789 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
10 Hb_012340_090 0.1482255041 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
11 Hb_000035_250 0.1485427106 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
12 Hb_000152_180 0.1485697081 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
13 Hb_146255_020 0.148749494 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
14 Hb_000312_070 0.1499524504 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001105_170 0.1504610125 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
16 Hb_000120_250 0.151220347 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
17 Hb_000975_220 0.1515405846 - - Histone H2B [Medicago truncatula]
18 Hb_005332_080 0.1517549481 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
19 Hb_100790_010 0.152151929 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001804_090 0.152445292 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_240 Hb_000975_240 Hb_003077_150 Hb_003077_150 Hb_000975_240--Hb_003077_150 Hb_010080_010 Hb_010080_010 Hb_000975_240--Hb_010080_010 Hb_009771_060 Hb_009771_060 Hb_000975_240--Hb_009771_060 Hb_011053_010 Hb_011053_010 Hb_000975_240--Hb_011053_010 Hb_000413_060 Hb_000413_060 Hb_000975_240--Hb_000413_060 Hb_011386_050 Hb_011386_050 Hb_000975_240--Hb_011386_050 Hb_003077_150--Hb_009771_060 Hb_001329_090 Hb_001329_090 Hb_003077_150--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003077_150--Hb_000905_120 Hb_003077_150--Hb_000413_060 Hb_003556_030 Hb_003556_030 Hb_003077_150--Hb_003556_030 Hb_000120_250 Hb_000120_250 Hb_010080_010--Hb_000120_250 Hb_100790_010 Hb_100790_010 Hb_010080_010--Hb_100790_010 Hb_010080_010--Hb_011386_050 Hb_001277_280 Hb_001277_280 Hb_010080_010--Hb_001277_280 Hb_000340_130 Hb_000340_130 Hb_010080_010--Hb_000340_130 Hb_007263_010 Hb_007263_010 Hb_009771_060--Hb_007263_010 Hb_002194_050 Hb_002194_050 Hb_009771_060--Hb_002194_050 Hb_005332_080 Hb_005332_080 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_000152_180 Hb_000152_180 Hb_009771_060--Hb_000152_180 Hb_011053_010--Hb_000413_060 Hb_000390_090 Hb_000390_090 Hb_011053_010--Hb_000390_090 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_000163_100 Hb_000163_100 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_146255_020 Hb_146255_020 Hb_011053_010--Hb_146255_020 Hb_000413_060--Hb_000163_100 Hb_000413_060--Hb_003556_030 Hb_000413_240 Hb_000413_240 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_000390_090 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110 Hb_004994_080 Hb_004994_080 Hb_011386_050--Hb_004994_080 Hb_011386_050--Hb_000340_130 Hb_002027_320 Hb_002027_320 Hb_011386_050--Hb_002027_320 Hb_006555_040 Hb_006555_040 Hb_011386_050--Hb_006555_040 Hb_011386_050--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_011386_050--Hb_000364_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.5967 64.1086 344.331 39.7854 49.276 38.6688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.963 109.177 63.1559 60.8856 76.6065

CAGE analysis