Hb_000905_120

Information

Type -
Description -
Location Contig905: 126530-129611
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06890g
description POPTRDRAFT_722739; hypothetical protein
nr
ID XP_012065530.1
description PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16733 PE=3 SV=1
Gene Ontology
ID GO:0003723
description PREDICTED: uncharacterized protein LOC105628677

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61999: 126611-129618 , PASA_asmbl_62000: 128362-128828 , PASA_asmbl_62001: 128141-128349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_120 0.0 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
2 Hb_007263_010 0.1026158865 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_001541_110 0.1045818008 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_003556_030 0.1062364502 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
5 Hb_003077_150 0.1083948578 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
6 Hb_000413_060 0.1104517596 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
7 Hb_007451_040 0.110740675 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
8 Hb_004129_090 0.112338806 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
9 Hb_002027_320 0.1127462518 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
10 Hb_010098_020 0.1163208351 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_001329_090 0.1174912249 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001252_240 0.1175325011 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
13 Hb_002284_210 0.1190447822 - - PREDICTED: protein canopy-1 [Jatropha curcas]
14 Hb_005332_080 0.1232202361 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
15 Hb_146255_020 0.1233770561 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
16 Hb_001804_090 0.1240770697 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
17 Hb_004994_080 0.1243643215 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001102_050 0.1247119873 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
19 Hb_010080_010 0.1255002072 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
20 Hb_000003_780 0.125536924 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_000905_120 Hb_000905_120 Hb_007263_010 Hb_007263_010 Hb_000905_120--Hb_007263_010 Hb_001541_110 Hb_001541_110 Hb_000905_120--Hb_001541_110 Hb_003556_030 Hb_003556_030 Hb_000905_120--Hb_003556_030 Hb_003077_150 Hb_003077_150 Hb_000905_120--Hb_003077_150 Hb_000413_060 Hb_000413_060 Hb_000905_120--Hb_000413_060 Hb_007451_040 Hb_007451_040 Hb_000905_120--Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_004994_080 Hb_004994_080 Hb_007263_010--Hb_004994_080 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_003556_030--Hb_000413_060 Hb_001329_090 Hb_001329_090 Hb_003556_030--Hb_001329_090 Hb_000413_240 Hb_000413_240 Hb_003556_030--Hb_000413_240 Hb_000390_090 Hb_000390_090 Hb_003556_030--Hb_000390_090 Hb_003556_030--Hb_003077_150 Hb_009771_060 Hb_009771_060 Hb_003077_150--Hb_009771_060 Hb_003077_150--Hb_001329_090 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240 Hb_000163_100 Hb_000163_100 Hb_000413_060--Hb_000163_100 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_000390_090 Hb_011053_010 Hb_011053_010 Hb_000413_060--Hb_011053_010 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.451 5.05317 36.0499 12.6343 5.65434 5.55798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21028 13.3393 5.7509 4.16297 10.465

CAGE analysis