Hb_011053_010

Information

Type -
Description -
Location Contig11053: 16870-21109
Sequence    

Annotation

kegg
ID rcu:RCOM_1454600
description hypothetical protein
nr
ID XP_012068539.1
description PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KW71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24455 PE=4 SV=1
Gene Ontology
ID GO:0010207
description PREDICTED: uncharacterized protein LOC105631146

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03312: 16893-21113 , PASA_asmbl_03313: 16936-21117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011053_010 0.0 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
2 Hb_000413_060 0.088971293 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
3 Hb_000390_090 0.1010717052 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
4 Hb_006061_040 0.1074323082 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
5 Hb_000163_100 0.1088100039 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
6 Hb_002343_040 0.1094115705 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_146255_020 0.1094440747 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
8 Hb_001105_170 0.1139841958 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
9 Hb_000025_370 0.1165666563 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
10 Hb_001804_090 0.1179585747 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
11 Hb_000413_240 0.1188377413 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
12 Hb_001863_380 0.1210464757 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
13 Hb_000975_240 0.126621169 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
14 Hb_002028_090 0.1311724238 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
15 Hb_003556_030 0.1332719152 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
16 Hb_118282_010 0.1340984698 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
17 Hb_000028_070 0.1364518142 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
18 Hb_001493_050 0.1370709257 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
19 Hb_009252_060 0.1397391407 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
20 Hb_003077_150 0.1410572704 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011053_010 Hb_011053_010 Hb_000413_060 Hb_000413_060 Hb_011053_010--Hb_000413_060 Hb_000390_090 Hb_000390_090 Hb_011053_010--Hb_000390_090 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_000163_100 Hb_000163_100 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_146255_020 Hb_146255_020 Hb_011053_010--Hb_146255_020 Hb_000413_060--Hb_000163_100 Hb_003556_030 Hb_003556_030 Hb_000413_060--Hb_003556_030 Hb_000413_240 Hb_000413_240 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_000390_090 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110 Hb_000390_090--Hb_000413_240 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_006061_040--Hb_146255_020 Hb_004807_020 Hb_004807_020 Hb_006061_040--Hb_004807_020 Hb_001804_090 Hb_001804_090 Hb_006061_040--Hb_001804_090 Hb_000926_200 Hb_000926_200 Hb_006061_040--Hb_000926_200 Hb_006061_040--Hb_002343_040 Hb_000163_100--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_000163_100--Hb_001863_380 Hb_002946_190 Hb_002946_190 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040 Hb_002343_040--Hb_001863_380 Hb_012340_090 Hb_012340_090 Hb_002343_040--Hb_012340_090 Hb_001105_170 Hb_001105_170 Hb_002343_040--Hb_001105_170 Hb_002343_040--Hb_146255_020 Hb_002343_040--Hb_004807_020 Hb_001025_090 Hb_001025_090 Hb_002343_040--Hb_001025_090 Hb_146255_020--Hb_004807_020 Hb_146255_020--Hb_001025_090 Hb_146255_020--Hb_001105_170 Hb_146255_020--Hb_001804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30906 4.9676 23.4592 4.6855 4.00315 4.13486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93991 16.705 6.91215 5.20846 7.00582

CAGE analysis